HHsearch alignment for GI: 255764515 and conserved domain: TIGR00604
>TIGR00604 rad3 DNA repair helicase (rad3); InterPro: IPR013020 All proteins in this family for which functions are known are DNA-DNA helicases that function in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. .
Probab=94.78 E-value=0.014 Score=33.79 Aligned_cols=28 Identities=29% Similarity=0.411 Sum_probs=19.7
Q ss_pred HHHHHHHHH---HHHC-CCEEE-----EECCCCCHHH
Q ss_conf 789999999---9967-98099-----9588998689
Q gi|255764515|r 5 PHQTKIVDW---ILDH-KRCAI-----WASMGSGKTV 32 (458)
Q Consensus 5 p~Q~~~v~~---~~~~-~~~ll-----~~~~G~GKT~ 32 (458)
T Consensus 18 p~q~~~~~~~~~~Ld~~~~~~~~~E~dE~PsgtgKt~ 54 (813)
T TIGR00604 18 PEQRSYMRDLKRSLDRGDEAILSAEYDEMPSGTGKTI 54 (813)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEE
T ss_conf 4554445777887714765246635565638887400