HHsearch alignment for GI: 255764515 and conserved domain: TIGR00635
>TIGR00635 ruvB Holliday junction DNA helicase RuvB; InterPro: IPR004605 All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.; GO: 0003677 DNA binding, 0005524 ATP binding, 0009378 Holliday junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=90.38 E-value=0.24 Score=26.36 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=18.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 980999588998689999999999
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYI 41 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l 41 (458)
T Consensus 31 DH~LL~GPPGLGKTTLA~IiA~Em 54 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 416631756874678999999983