HHsearch alignment for GI: 255764515 and conserved domain: TIGR01074
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=96.40 E-value=0.0084 Score=35.21 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=32.7
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 9874789999999996798099958899868999999999997
Q gi|255764515|r 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHL 43 (458)
Q Consensus 1 ~~L~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~~~l~~ 43 (458)
T Consensus 2 ~~LNp~Q~~AV~Y~--~GPlLVLAGAGSGKT~VI~~KIayLi~ 42 (677)
T TIGR01074 2 SKLNPQQQEAVEYV--GGPLLVLAGAGSGKTRVITNKIAYLIQ 42 (677)
T ss_pred CCCCHHHHHHHHHH--CCCCEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 88874379999861--587146517777863578889999875