HHsearch alignment for GI: 255764515 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.36 E-value=4.5e-06 Score=55.01 Aligned_cols=145 Identities=18% Similarity=0.179 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH----HHHHHCCC--CCEEEEECCHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 47899999999967980999588998689999999----99997599--9499991604656999999998558888159
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVSVLTAL----SYIHLWGE--KSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~~~----~~l~~~~~--~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~ 77 (458)
T Consensus 229 ~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~-RL~esl~~~-~~~L~- 305 (753)
T TIGR01447 229 TDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAA-RLAESLRKA-VKKLA- 305 (753)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHH-HHHHHHHHH-HHHHH-
T ss_conf 379999999986087689987988977899999999999989864997404788668447999-999999988-63223-
Q ss_pred EEEECCHHHHHHHHCCCCCEEEECCCCH--------HHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9985897898887307798699806420--------23344200011322044045310024654311567777665430
Q gi|255764515|r 78 SVITGTVKQRTKVLKTPAVLYVINFENL--------GWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAW 149 (458)
Q Consensus 78 ~~~~g~~~~r~~~~~~~~~i~i~s~e~~--------~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~ 149 (458)
T Consensus 306 -~~~~aid~--~~~-~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSMV------dl~lm~kL~~A~~~ 375 (753)
T TIGR01447 306 -AENMAIDE--DLI-AALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASMV------DLPLMAKLLKALPP 375 (753)
T ss_pred -HHCCCCCH--HHH-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHC------CHHHHHHHHHHCCC
T ss_conf -42366587--985-487204568888616614787677677778898552787060022------67999999972263
Q ss_pred CCC------EEEEECCCC
Q ss_conf 598------079965840
Q gi|255764515|r 150 ESE------RFIELTGTP 161 (458)
Q Consensus 150 ~~~------~~l~LTgTP 161 (458)
T Consensus 376 ~~k~~KLy~~~LIllGD~ 393 (753)
T TIGR01447 376 NTKDKKLYADRLILLGDK 393 (753)
T ss_pred CCCCCCHHHCCCCEECCC
T ss_conf 001320101020012267