HHsearch alignment for GI: 255764515 and conserved domain: TIGR01587
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=99.34 E-value=7e-11 Score=84.16 Aligned_cols=114 Identities=11% Similarity=0.248 Sum_probs=62.4
Q ss_pred CCCHHHH-HHCC-CCCEEEEHHHHHHHHHHHHHCCC-----------------CCCCHHHH--HHHHHHHCC----CCCC
Q ss_conf 3325665-4124-88403422236788866410002-----------------65334458--998764245----8855
Q gi|255764515|r 309 IKALEVI-IEKA-NAAPIIVAYHFNSDLARLQKAFP-----------------QGRTLDKD--PCTIQEWNE----GKIP 363 (458)
Q Consensus 309 ~~~l~~i-l~~~-~~~kviif~~~~~~~~~i~~~~~-----------------~g~~~~~r--~~~i~~f~~----~~~~ 363 (458)
T Consensus 255 ~~~~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR~~KEde~~~l~e~~~S~~~~~~~ 334 (424)
T TIGR01587 255 ISSLERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKDRAKKEDEAELLKELKKSAWKDNEK 334 (424)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 34666677874157786699985438999999998512652002124404477003667767999999851013544577
Q ss_pred EEEEEHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCC--CCCCEEEEEEEECC
Q ss_conf 89984422111622001785999908998986864456666202202037--87752899998589
Q gi|255764515|r 364 LLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIAQN 427 (458)
Q Consensus 364 vli~s~~~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~G--q~~~v~v~~li~~~ 427 (458)
T Consensus 335 ~v~V~TQv~E~SlD~s-~-D~~i-Te-~aP~d~LiQR~GR~~R~~-~~~~d~~~~~~y~~~~~~~~ 395 (424)
T TIGR01587 335 FVIVATQVIEVSLDIS-V-DVMI-TE-LAPIDSLIQRLGRLNRYG-RKIGDIENREVYILTILLED 395 (424)
T ss_pred EEEEEEEEEEEEEECC-C-CHHH-HH-CCCHHHHHHHHHHHCCCC-CCCCCCCCCCEEEEEECCCC
T ss_conf 0699878788864204-4-4134-31-150123355421110113-56578898720378525788