HHsearch alignment for GI: 255764515 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.50 E-value=0.011 Score=34.53 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=68.1
Q ss_pred HHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-----CCCCC--CEEEEEECCH
Q ss_conf 9996798099958899868999-99999999759994999916046569999999985-----58888--1599985897
Q gi|255764515|r 13 WILDHKRCAIWASMGSGKTVSV-LTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRW-----SNFSH--MNISVITGTV 84 (458)
Q Consensus 13 ~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf-----~~~~~--~~~~~~~g~~ 84 (458)
T Consensus 13 al~~~~~vvL~APpGAGKsT~~PLaLL~~pW~~-~~kIimLEPRRlAA----R~~A~rlA~~LgE~VG~tVGyRvR~enk 87 (858)
T TIGR01970 13 ALAAHPQVVLEAPPGAGKSTAVPLALLDAPWLI-GGKIIMLEPRRLAA----RSAAQRLASQLGEEVGDTVGYRVRLENK 87 (858)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCHHHHH----HHHHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf 861176506416722471105889976626434-88078747447899----9999999997088988620405771132
Q ss_pred HHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCC
Q ss_conf 89888730779869980642023344200011322044045310--0246543115677776654305-98079965840
Q gi|255764515|r 85 KQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRLRQGSKTARALAKPAWE-SERFIELTGTP 161 (458)
Q Consensus 85 ~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgTP 161 (458)
T Consensus 88 ------Vs~~TRlEvVTEGiLTRMlQ~DP~L~GVg~liFDEFHERsL~aDL--aLALaLdVQs~LRdDPPLkil~MSATL 159 (858)
T TIGR01970 88 ------VSARTRLEVVTEGILTRMLQDDPELEGVGLLIFDEFHERSLDADL--ALALALDVQSALRDDPPLKILIMSATL 159 (858)
T ss_pred ------CCCCCCEEEEECCHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCEEHHCCCCC
T ss_conf ------587754578723268774016888453523231102243467889--999988533431068640000000263
Q ss_pred HHHHCCCHHHH
Q ss_conf 23100101346
Q gi|255764515|r 162 SPNGLIDLWGQ 172 (458)
Q Consensus 162 i~n~~~el~~l 172 (458)
T Consensus 160 dg~rLs~LL~~ 170 (858)
T TIGR01970 160 DGERLSSLLPD 170 (858)
T ss_pred HHHHHHHHCCC
T ss_conf 27999974330