HHsearch alignment for GI: 255764515 and conserved domain: TIGR01970

>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=96.50  E-value=0.011  Score=34.53  Aligned_cols=147  Identities=16%  Similarity=0.129  Sum_probs=68.1

Q ss_pred             HHHHCCCEEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHH-----CCCCC--CEEEEEECCH
Q ss_conf             9996798099958899868999-99999999759994999916046569999999985-----58888--1599985897
Q gi|255764515|r   13 WILDHKRCAIWASMGSGKTVSV-LTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRW-----SNFSH--MNISVITGTV   84 (458)
Q Consensus        13 ~~~~~~~~ll~~~~G~GKT~~a-l~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf-----~~~~~--~~~~~~~g~~   84 (458)
T Consensus        13 al~~~~~vvL~APpGAGKsT~~PLaLL~~pW~~-~~kIimLEPRRlAA----R~~A~rlA~~LgE~VG~tVGyRvR~enk   87 (858)
T TIGR01970        13 ALAAHPQVVLEAPPGAGKSTAVPLALLDAPWLI-GGKIIMLEPRRLAA----RSAAQRLASQLGEEVGDTVGYRVRLENK   87 (858)
T ss_pred             HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHC-CCEEEEECCHHHHH----HHHHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf             861176506416722471105889976626434-88078747447899----9999999997088988620405771132


Q ss_pred             HHHHHHHCCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCC--CCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCC
Q ss_conf             89888730779869980642023344200011322044045310--0246543115677776654305-98079965840
Q gi|255764515|r   85 KQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTK--LKSFRLRQGSKTARALAKPAWE-SERFIELTGTP  161 (458)
Q Consensus        85 ~~r~~~~~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~--lkn~~~~~~s~~~~~l~~~~~~-~~~~l~LTgTP  161 (458)
T Consensus        88 ------Vs~~TRlEvVTEGiLTRMlQ~DP~L~GVg~liFDEFHERsL~aDL--aLALaLdVQs~LRdDPPLkil~MSATL  159 (858)
T TIGR01970        88 ------VSARTRLEVVTEGILTRMLQDDPELEGVGLLIFDEFHERSLDADL--ALALALDVQSALRDDPPLKILIMSATL  159 (858)
T ss_pred             ------CCCCCCEEEEECCHHHHHCCCCCCCCCCCEEEECHHHHHHHHHHH--HHHHHHHHHHHHCCCCCCEEHHCCCCC
T ss_conf             ------587754578723268774016888453523231102243467889--999988533431068640000000263


Q ss_pred             HHHHCCCHHHH
Q ss_conf             23100101346
Q gi|255764515|r  162 SPNGLIDLWGQ  172 (458)
Q Consensus       162 i~n~~~el~~l  172 (458)
T Consensus       160 dg~rLs~LL~~  170 (858)
T TIGR01970       160 DGERLSSLLPD  170 (858)
T ss_pred             HHHHHHHHCCC
T ss_conf             27999974330