HHsearch alignment for GI: 255764515 and conserved domain: TIGR02639

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=95.95  E-value=0.11  Score=28.55  Aligned_cols=83  Identities=23%  Similarity=0.301  Sum_probs=42.8

Q ss_pred             CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEE-EEECCH-----HHHHHHH
Q ss_conf             9809995889986899999999999759994999916046569999999985588881599-985897-----8988873
Q gi|255764515|r   18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNIS-VITGTV-----KQRTKVL   91 (458)
Q Consensus        18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~-~~~g~~-----~~r~~~~   91 (458)
T Consensus       230 NNPl~VGEPGVGKTAI~EGLA~~I~~-~-~kv----Pe~Lk-n---------~~IY~LDmG~LLAGTKYRGDFE~RLK--  291 (774)
T TIGR02639       230 NNPLLVGEPGVGKTAIVEGLAQRIAE-G-QKV----PEVLK-N---------AKIYSLDMGTLLAGTKYRGDFEERLK--  291 (774)
T ss_pred             CCCCEECCCCCCHHHHHHHHHHHHHC-C-CCC----CHHHC-C---------CCEEEECHHHHHHHCCCCCHHHHHHH--
T ss_conf             88720448886448999999998641-5-646----70024-7---------83454043456410245424789999--


Q ss_pred             CCCCCEEEECCCCHHHHHHHCCCCCCCC-EEECCCCCCCCCCCC
Q ss_conf             0779869980642023344200011322-044045310024654
Q gi|255764515|r   92 KTPAVLYVINFENLGWLVQELKGTWPFA-TIVVDESTKLKSFRL  134 (458)
Q Consensus        92 ~~~~~i~i~s~e~~~~~~~~~~~~~~~~-~iIiDEaH~lkn~~~  134 (458)
T Consensus       292 ---------------~V~~Ei~~-~~~anILFIDEIHTIVGAGA  319 (774)
T TIGR02639       292 ---------------AVVSEIEK-EPNANILFIDEIHTIVGAGA  319 (774)
T ss_pred             ---------------HHHHHHHC-CCCCCEEEEECCCCEEECCC
T ss_conf             ---------------99999852-89995466411010331787