HHsearch alignment for GI: 255764515 and conserved domain: TIGR02639
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit ClpA; InterPro: IPR013461 Proteins in this entry are related to ClpA () from Escherichia coli. ClpA is an ATP-dependent chaperone and part of the ClpAP protease that participates in regulatory protein degradation and the dissolution and degradation of protein aggregates . ClpA recognises sequences in specific proteins, which it then unfolds in an ATP-dependent manner and transports into the degradation chamber of the associated ClpP protein , . A small adaptor-like protein, ClpS, modulates the activity of ClpA and is an important regulatory factor for this protein . It protects ClpA from autodegradation and appears to redirect its activity away from soluble proteins and toward aggregated proteins..
Probab=95.95 E-value=0.11 Score=28.55 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=42.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEE-EEECCH-----HHHHHHH
Q ss_conf 9809995889986899999999999759994999916046569999999985588881599-985897-----8988873
Q gi|255764515|r 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNIS-VITGTV-----KQRTKVL 91 (458)
Q Consensus 18 ~~~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~-~~~g~~-----~~r~~~~ 91 (458)
T Consensus 230 NNPl~VGEPGVGKTAI~EGLA~~I~~-~-~kv----Pe~Lk-n---------~~IY~LDmG~LLAGTKYRGDFE~RLK-- 291 (774)
T TIGR02639 230 NNPLLVGEPGVGKTAIVEGLAQRIAE-G-QKV----PEVLK-N---------AKIYSLDMGTLLAGTKYRGDFEERLK-- 291 (774)
T ss_pred CCCCEECCCCCCHHHHHHHHHHHHHC-C-CCC----CHHHC-C---------CCEEEECHHHHHHHCCCCCHHHHHHH--
T ss_conf 88720448886448999999998641-5-646----70024-7---------83454043456410245424789999--
Q ss_pred CCCCCEEEECCCCHHHHHHHCCCCCCCC-EEECCCCCCCCCCCC
Q ss_conf 0779869980642023344200011322-044045310024654
Q gi|255764515|r 92 KTPAVLYVINFENLGWLVQELKGTWPFA-TIVVDESTKLKSFRL 134 (458)
Q Consensus 92 ~~~~~i~i~s~e~~~~~~~~~~~~~~~~-~iIiDEaH~lkn~~~ 134 (458)
T Consensus 292 ---------------~V~~Ei~~-~~~anILFIDEIHTIVGAGA 319 (774)
T TIGR02639 292 ---------------AVVSEIEK-EPNANILFIDEIHTIVGAGA 319 (774)
T ss_pred ---------------HHHHHHHC-CCCCCEEEEECCCCEEECCC
T ss_conf ---------------99999852-89995466411010331787