HHsearch alignment for GI: 255764515 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=99.78 E-value=2.4e-19 Score=135.43 Aligned_cols=112 Identities=21% Similarity=0.353 Sum_probs=94.0
Q ss_pred HCCCCCCCCHHHHHHCC--CCCEEEEHHHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHCCCCCCEEEEEHH
Q ss_conf 01343333256654124--8840342223678886641000----------26533445899876424588558998442
Q gi|255764515|r 303 EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPA 370 (458)
Q Consensus 303 ~~~~~k~~~l~~il~~~--~~~kviif~~~~~~~~~i~~~~----------~~g~~~~~r~~~i~~f~~~~~~vli~s~~ 370 (458)
T Consensus 8 ~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t-~ 86 (131)
T cd00079 8 PVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVAT-D 86 (131)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEE-E
T ss_conf 386699999999999999789909999788999999999995589989999899999999999999775401048875-1
Q ss_pred HCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCHHCCCCCCEEEE
Q ss_conf 211162200178599990899898686445666620220203787752899
Q gi|255764515|r 371 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 421 (458)
Q Consensus 371 ~~~~GlnL~~a~~~iI~~~~~wn~~~~~Q~~gRi~~~r~hR~Gq~~~v~v~ 421 (458)
T Consensus 87 ~~~~Gldl~~-~~~vI~~~~~~s~~~~~Q~~GR~-----~R~gq~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLPN-VSVVINYDLPWSPSSYLQRIGRA-----GRAGQKGTAILL 131 (131)
T ss_pred CCEECCCCCC-CCEEEEECCCCCHHHHHHHHHCC-----CCCCCCEEEEEC
T ss_conf 1200366102-87999978996989999897216-----708996379979