HHsearch alignment for GI: 255764515 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=95.48  E-value=0.16  Score=27.43  Aligned_cols=39  Identities=23%  Similarity=0.222  Sum_probs=27.7

Q ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE----CCHHHH
Q ss_conf             0999588998689999999999975999499991----604656
Q gi|255764515|r   20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIA----PLRVAQ   59 (458)
Q Consensus        20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~----P~~l~~   59 (458)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~~g-e~~lyis~eE~~~~l~~   44 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIE   44 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCCHHHHHH
T ss_conf             15876899999999999999998769-97899995079999999