HHsearch alignment for GI: 255764515 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=92.96 E-value=0.39 Score=25.14 Aligned_cols=59 Identities=25% Similarity=0.248 Sum_probs=35.0
Q ss_pred HHHHHHHHCC--C---EEEEECCCCCHHHHHHHHHHHHHHCC-----CCCEEEEECCHHHHHHHHHHHH
Q ss_conf 9999999679--8---09995889986899999999999759-----9949999160465699999999
Q gi|255764515|r 9 KIVDWILDHK--R---CAIWASMGSGKTVSVLTALSYIHLWG-----EKSVLVIAPLRVAQSVWTSEVQ 67 (458)
Q Consensus 9 ~~v~~~~~~~--~---~ll~~~~G~GKT~~al~~~~~l~~~~-----~~~~LIv~P~~l~~~~W~~Ei~ 67 (458)
T Consensus 6 ~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~~~rl~~i~ 74 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLA 74 (226)
T ss_pred HHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 789988579988883999999999989999999999985422116999619999557753199999998