HHsearch alignment for GI: 255764515 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=100.00 E-value=0 Score=324.86 Aligned_cols=276 Identities=22% Similarity=0.312 Sum_probs=209.0
Q ss_pred HHHHHHHHHHH----CCCEEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 89999999996----79809995889986899999999999759--9949999160465699999999855888815999
Q gi|255764515|r 6 HQTKIVDWILD----HKRCAIWASMGSGKTVSVLTALSYIHLWG--EKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISV 79 (458)
Q Consensus 6 ~Q~~~v~~~~~----~~~~ll~~~~G~GKT~~al~~~~~l~~~~--~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~ 79 (458)
T Consensus 1 yQ~~gv~wl~~~~~~~~ggiLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~sl~~-~W~~Ei~~~~~--~~~~~~ 77 (295)
T pfam00176 1 YQLEGVNWLISLYNNGLGGILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPLSTLD-NWLNEFEKWAP--DLNIVV 77 (295)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH-HHHHHHHHHCC--CCCEEE
T ss_conf 978899999998727999897227875799999999999998388999889997578887-67889998679--970799
Q ss_pred EECCHHHHHHHH-----CCCCCEEEECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf 858978988873-----077986998064202334420001132204404531002465431156777766543059807
Q gi|255764515|r 80 ITGTVKQRTKVL-----KTPAVLYVINFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERF 154 (458)
Q Consensus 80 ~~g~~~~r~~~~-----~~~~~i~i~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~ 154 (458)
T Consensus 78 ~~~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~~~l-~~~~w~~vI~DEaH~iKN~----~s~~~~a~~~l--~~~~r 150 (295)
T pfam00176 78 YYGDGDSRSELLRNVLRTGKFDVLITSYEYIRRDKDEL-HKANWRYVILDEGHRIKNA----KSKLSLALKSL--KTNNR 150 (295)
T ss_pred EEECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH-HCCCCCEEEEECCCCCCCH----HHHHHHHHHHC--CCCCE
T ss_conf 98470768999886774168859993099999759998-4087658998762012587----88999999952--35818
Q ss_pred EEECCCCHHHHCCCHHHHHHHCCCCCCCCCCHHHHHHHHCCHHHHCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9965840231001013467751788877532778877736956403300002--45555455899999742454332000
Q gi|255764515|r 155 IELTGTPSPNGLIDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAV--RYTAKETAQKEIEAQLSDCCLSLDIA 232 (458)
Q Consensus 155 l~LTgTPi~n~~~el~~ll~~l~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~~~~~~~ 232 (458)
T Consensus 151 ~~LTGTPiqN~l~el~~ll~fl~p~~-~~-~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~lRR~K~ 228 (295)
T pfam00176 151 LLLTGTPIQNNLAELWSLLNFLRPGI-FG-SFKEFDKWFVNPILNGGCSDATEKLEEAGLKLINRLHKILKPFLLRRLKK 228 (295)
T ss_pred EEEECCCCCCCHHHHHHHHHHHCCCC-CC-CHHHHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99868745588899999999958765-69-99999999723554277643205778889999999999988899861198
Q ss_pred CCC-CCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHC--CC---CCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 010-010011000345245368998889999998510--33---45202234788887542035410
Q gi|255764515|r 233 DYQ-NIDKPILITKKVPLPQPVMKQYHKFQRELYCDL--QG---ENIEAFNSASKTVKCLQLANGAV 293 (458)
Q Consensus 233 ~~~-~l~~~~~~~~~v~l~~~~~~~y~~~~~~~~~~~--~~---~~~~~~~~~~~~~~l~q~~~~~~ 293 (458)
T Consensus 229 dv~~~LP~k~e~~i~v~ls~~q~~~Y~~~l~~~~~~~~~~~~~~~~~~~~~il~~l~rLRq~C~HP~ 295 (295)
T pfam00176 229 DVEKSLPPKTEYVLFCNLSKLQKELYKKFLTSKDVKFINDGNGVKYGGKSRLLNLILELRKICNHPY 295 (295)
T ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 7762489977999982899999999999998878999863037532439999999999999977999