HHsearch alignment for GI: 255764515 and conserved domain: pfam00270
>pfam00270 DEAD DEAD/DEAH box helicase. Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Probab=99.79 E-value=6.5e-18 Score=126.75 Aligned_cols=160 Identities=22% Similarity=0.232 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH-HHHHHHHC-CCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 478999999999679809995889986899999-99999975-9994999916046569999999985588881599985
Q gi|255764515|r 4 APHQTKIVDWILDHKRCAIWASMGSGKTVSVLT-ALSYIHLW-GEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVIT 81 (458)
Q Consensus 4 ~p~Q~~~v~~~~~~~~~ll~~~~G~GKT~~al~-~~~~l~~~-~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~ 81 (458)
T Consensus 1 ~~~Q~~~i~~~~~g~~~iv~~pTGsGKT~~~~~~~l~~~~~~~~~~~~v~l~Pt~aL~~q~~~~~~~~~~~~~~~~~~~~ 80 (167)
T pfam00270 1 TPIQAEAIPAILEGKDVLVQAPTGSGKTLAFLLPALQALLKNPDGPQALVLAPTRELAEQIYEELKKLGKYLGLKVALLY 80 (167)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 94599999999769978998899975899999999999874778987999906088888999886432102676404641
Q ss_pred CCH--HHHHHHHCCCCCEEEECCCCHHHHHHHC-CCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
Q ss_conf 897--8988873077986998064202334420-0011322044045310024654311567777665430598079965
Q gi|255764515|r 82 GTV--KQRTKVLKTPAVLYVINFENLGWLVQEL-KGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELT 158 (458)
Q Consensus 82 g~~--~~r~~~~~~~~~i~i~s~e~~~~~~~~~-~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LT 158 (458)
T Consensus 81 g~~~~~~~~~~~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lIvDE~H~~~~~~--~g~~~~~il~~l-~~~~q~v~~S 157 (167)
T pfam00270 81 GGDSPKEQLRKLKKGPDILVGTPGRLLDLLERGGLLLKNLKLLVLDEAHRLLDQG--FGDDLEEILRRL-PPKRQILLLS 157 (167)
T ss_pred CCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECHHHHHCCC--HHHHHHHHHHHC-CCCCCEEEEE
T ss_conf 7861788987640577079947899999998033121100389988088673358--299999999857-9999789997
Q ss_pred CCCHHHHCC
Q ss_conf 840231001
Q gi|255764515|r 159 GTPSPNGLI 167 (458)
Q Consensus 159 gTPi~n~~~ 167 (458)
T Consensus 158 AT~~-~~~~ 165 (167)
T pfam00270 158 ATLP-RNVE 165 (167)
T ss_pred CCCC-HHHH
T ss_conf 2699-7785