HHsearch alignment for GI: 255764515 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=95.00 E-value=0.23 Score=26.53 Aligned_cols=127 Identities=17% Similarity=0.163 Sum_probs=55.0
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEE
Q ss_conf 09995889986899999999999759994999916046569999999985588881599985897898887307798699
Q gi|255764515|r 20 CAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYV 99 (458)
Q Consensus 20 ~ll~~~~G~GKT~~al~~~~~l~~~~~~~~LIv~P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i 99 (458)
T Consensus 4 i~lvGptGvGKTTTiaKLAa~~~~~~-~~V~lit~Dt~R~-gA~eQL~~ya~~l~v~~~~~~~~~d~-~~~--------- 71 (196)
T pfam00448 4 ILLVGLQGSGKTTTIAKLAAYLKKQG-KKVLLVAADTFRA-AAIEQLKQLAERLGVPVFGSGTGSDP-AAV--------- 71 (196)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCCCCH-HHHHHHHHHHHHCCCEEEECCCCCCH-HHH---------
T ss_conf 99989999988999999999999779-9289997587768-89999999998639817814877787-899---------
Q ss_pred ECCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHC
Q ss_conf 8064202334420001132204404531002465431156777766543059807996584023100
Q gi|255764515|r 100 INFENLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGL 166 (458)
Q Consensus 100 ~s~e~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~ 166 (458)
T Consensus 72 -----~~~~l~~-~~~~~~D~IlIDTaGr~--~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~ 130 (196)
T pfam00448 72 -----AFDAVEK-AKAENYDVVLVDTAGRL--QNDKNLMDELKKIKRVIAPDEVLLVLDATTGQNAL 130 (196)
T ss_pred -----HHHHHHH-HHHCCCCEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf -----9999999-88468999999899987--47677899999998522873028998567782137