HHsearch alignment for GI: 255764515 and conserved domain: pfam03354
>pfam03354 Terminase_1 Phage Terminase. The majority of the members of this family are bacteriophage proteins, several of which are thought to be terminase large subunit proteins. There are also a number of bacterial proteins of unknown function.
Probab=94.75 E-value=0.19 Score=27.03 Aligned_cols=51 Identities=20% Similarity=0.255 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHH----C-----CCEEEEECCCCCHHHHHHHHHH-HHHHCCCC--CEEEEECC
Q ss_conf 789999999996----7-----9809995889986899999999-99975999--49999160
Q gi|255764515|r 5 PHQTKIVDWILD----H-----KRCAIWASMGSGKTVSVLTALS-YIHLWGEK--SVLVIAPL 55 (458)
Q Consensus 5 p~Q~~~v~~~~~----~-----~~~ll~~~~G~GKT~~al~~~~-~l~~~~~~--~~LIv~P~ 55 (458)
T Consensus 1 PwQ~f~i~~ifGw~~~~g~Rrfr~~~i~v~RkNGKS~l~a~i~ly~~~~~ge~~~ei~~~A~~ 63 (473)
T pfam03354 1 PWQKFILGLMFGWRKGCGVRRFREAYVSVGRKNGKSYLMAIRVLYELLLGGKSNQEILVAATT 63 (473)
T ss_pred CCHHHHHHHEEEEEECCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 946156251441892899889999999982686026999999999997099838749999798