HHsearch alignment for GI: 255764515 and conserved domain: pfam07015

>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=90.07  E-value=1.2  Score=22.20  Aligned_cols=115  Identities=16%  Similarity=0.133  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCCCEEEE-E-CCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEEECCC
Q ss_conf             899868999999999997599949999-1-60465699999999855888815999858978988873077986998064
Q gi|255764515|r   26 MGSGKTVSVLTALSYIHLWGEKSVLVI-A-PLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFE  103 (458)
Q Consensus        26 ~G~GKT~~al~~~~~l~~~~~~~~LIv-~-P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e  103 (458)
T Consensus        11 GG~GKtT~a~~la~~~~~~g~-~V~liD~Dpq~s~~-~W~~~a~~~~~~~~~-~~v~~~~~~-----------------~   70 (231)
T pfam07015        11 GGAGKTTALMGLCSALASDGK-RVALFEADENRPLT-KWRENALRKGTWDPA-CEIFNADEL-----------------P   70 (231)
T ss_pred             CCCCHHHHHHHHHHHHHHCCC-EEEEEECCCCCCHH-HHHHHHHHCCCCCCC-CCEECCCCH-----------------H
T ss_conf             986599999999999996899-59999689986889-999987646888876-522205660-----------------1


Q ss_pred             CHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHC
Q ss_conf             2023344200011322044045310024654311567777665430598079965840231001013467751
Q gi|255764515|r  104 NLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFL  176 (458)
Q Consensus       104 ~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l  176 (458)
T Consensus        71 ~l~~~~~~~-~~~~yD~VIIDtpg~~--------s~~~~~AI---~~ADlVLI----P~qpSplD~~~a~~t~  127 (231)
T pfam07015        71 LLEQAYEHA-EGSGFDYALADTHGGS--------SELNNTII---ASSDLLLI----PTMLTPLDIDEALATY  127 (231)
T ss_pred             HHHHHHHHH-HHCCCCEEEECCCCCC--------CHHHHHHH---HHCCEEEE----CCCCCHHHHHHHHHHH
T ss_conf             589999988-6579998998399857--------58999999---97898997----7899823399999999