HHsearch alignment for GI: 255764515 and conserved domain: pfam07015
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=90.07 E-value=1.2 Score=22.20 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=56.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEE-E-CCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHCCCCCEEEECCC
Q ss_conf 899868999999999997599949999-1-60465699999999855888815999858978988873077986998064
Q gi|255764515|r 26 MGSGKTVSVLTALSYIHLWGEKSVLVI-A-PLRVAQSVWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFE 103 (458)
Q Consensus 26 ~G~GKT~~al~~~~~l~~~~~~~~LIv-~-P~~l~~~~W~~Ei~kf~~~~~~~~~~~~g~~~~r~~~~~~~~~i~i~s~e 103 (458)
T Consensus 11 GG~GKtT~a~~la~~~~~~g~-~V~liD~Dpq~s~~-~W~~~a~~~~~~~~~-~~v~~~~~~-----------------~ 70 (231)
T pfam07015 11 GGAGKTTALMGLCSALASDGK-RVALFEADENRPLT-KWRENALRKGTWDPA-CEIFNADEL-----------------P 70 (231)
T ss_pred CCCCHHHHHHHHHHHHHHCCC-EEEEEECCCCCCHH-HHHHHHHHCCCCCCC-CCEECCCCH-----------------H
T ss_conf 986599999999999996899-59999689986889-999987646888876-522205660-----------------1
Q ss_pred CHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHCCCHHHHHHHC
Q ss_conf 2023344200011322044045310024654311567777665430598079965840231001013467751
Q gi|255764515|r 104 NLGWLVQELKGTWPFATIVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFL 176 (458)
Q Consensus 104 ~~~~~~~~~~~~~~~~~iIiDEaH~lkn~~~~~~s~~~~~l~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l 176 (458)
T Consensus 71 ~l~~~~~~~-~~~~yD~VIIDtpg~~--------s~~~~~AI---~~ADlVLI----P~qpSplD~~~a~~t~ 127 (231)
T pfam07015 71 LLEQAYEHA-EGSGFDYALADTHGGS--------SELNNTII---ASSDLLLI----PTMLTPLDIDEALATY 127 (231)
T ss_pred HHHHHHHHH-HHCCCCEEEECCCCCC--------CHHHHHHH---HHCCEEEE----CCCCCHHHHHHHHHHH
T ss_conf 589999988-6579998998399857--------58999999---97898997----7899823399999999