HHsearch alignment for GI: 255764515 and conserved domain: pfam11496
>pfam11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3. This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus.
Probab=97.15 E-value=0.012 Score=34.18 Aligned_cols=180 Identities=13% Similarity=0.154 Sum_probs=94.4
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHC----CCCCCHH---------HHHH-HHHHHHHHCCCCCCCC-----------CCC
Q ss_conf 0345245368998889999998510----3345202---------2347-8888754203541000-----------223
Q gi|255764515|r 244 TKKVPLPQPVMKQYHKFQRELYCDL----QGENIEA---------FNSA-SKTVKCLQLANGAVYY-----------DEE 298 (458)
Q Consensus 244 ~~~v~l~~~~~~~y~~~~~~~~~~~----~~~~~~~---------~~~~-~~~~~l~q~~~~~~~~-----------~~~ 298 (458)
T Consensus 7 ~lP~pM~~~qKdl~e~ivslh~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Va~HP~LlidH~~p~~l~~~~~ 86 (278)
T pfam11496 7 YLPTPMTSLQKDLTEQIVSLHYSDILKFCETSSSKEDIIKLLEDLAESIKLLFENLSNVATHPYLLIDHYMPKSLLLKEE 86 (278)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCH
T ss_conf 75056136788899999999889999998147752111112100899999999975554279326434557876644244
Q ss_pred CCCHHCCCCCCCCHHHHHHC----CCCCEEEEHHHHHHHHHHHHHCCCC---------CCCH-HHHHHHHHHHC-CCCCC
Q ss_conf 43000134333325665412----4884034222367888664100026---------5334-45899876424-58855
Q gi|255764515|r 299 KHWKEVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ---------GRTL-DKDPCTIQEWN-EGKIP 363 (458)
Q Consensus 299 ~~~~~~~~~k~~~l~~il~~----~~~~kviif~~~~~~~~~i~~~~~~---------g~~~-~~r~~~i~~f~-~~~~~ 363 (458)
T Consensus 87 ~~~~~~tSgKF~~L~~Li~~~~~~~~~~~ilIv~~~~k~ldLlE~~llgk~~~y~r~~g~~~~~~~~~-~~~~k~~~s~~ 165 (278)
T pfam11496 87 AEHLAETSGKFLVLNDLINLLIPSERDLHVLIISRSGKTLDLVEALLLGKGLKYKRLSGESLYEENHK-VSDKKGSLSFW 165 (278)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCC-CCCCCCCCEEE
T ss_conf 78999823339999999999873457837999978953799999997258646760788767665545-65557884069
Q ss_pred EEEEEHHHCCCCCCC-------CCCCCEEEEECCCCCHHHH-HHHHHHHHCCCCHHCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf 899844221116220-------0178599990899898686-44566662022020378775289999858996899999
Q gi|255764515|r 364 LLFAHPASCGHGLNL-------QYGGNILVFFSLWWDLEEH-QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 435 (458)
Q Consensus 364 vli~s~~~~~~GlnL-------~~a~~~iI~~~~~wn~~~~-~Q~~gRi~~~r~hR~Gq~~~v~v~~li~~~tide~i~~ 435 (458)
T Consensus 166 I~l~~~----~~~~~~~~~~~~~~~~d~Iia~D~s~d~~~p~ie~lR~~-----~~~~--~~~PvirLv~~nSiEHi~l~ 234 (278)
T pfam11496 166 IHLTTS----DGLTNTDSSLLSNYKFDLIISFDPSLDTSLPSIESLRTT-----NRRG--RLTPIIRLVVVNSIEHIELC 234 (278)
T ss_pred EEEECC----CCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHH-----CCCC--CCCCEEEEEECCCHHHHHHH
T ss_conf 997068----775457888443565277999568879897489999863-----4489--98877999526999999987