BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] (458 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62] Length = 458 Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/458 (100%), Positives = 458/458 (100%) Query: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQS 60 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQS Sbjct: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQS 60 Query: 61 VWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFAT 120 VWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFAT Sbjct: 61 VWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFAT 120 Query: 121 IVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGK 180 IVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGK Sbjct: 121 IVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGK 180 Query: 181 RLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP 240 RLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP Sbjct: 181 RLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP 240 Query: 241 ILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH 300 ILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH Sbjct: 241 ILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH 300 Query: 301 WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 360 WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG Sbjct: 301 WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 360 Query: 361 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 420 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV Sbjct: 361 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 420 Query: 421 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 458 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV Sbjct: 421 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 458 >gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62] Length = 205 Score = 430 bits (1105), Expect = e-122, Method: Compositional matrix adjust. Identities = 205/205 (100%), Positives = 205/205 (100%) Query: 254 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE Sbjct: 1 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60 Query: 314 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 373 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG Sbjct: 61 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 Query: 374 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 433 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV Sbjct: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180 Query: 434 LQRLRTKSTIQDLLLNALKKETIHV 458 LQRLRTKSTIQDLLLNALKKETIHV Sbjct: 181 LQRLRTKSTIQDLLLNALKKETIHV 205 >gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter asiaticus str. psy62] Length = 220 Score = 286 bits (733), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 143/216 (66%), Positives = 166/216 (76%), Gaps = 1/216 (0%) Query: 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVW 62 L PHQ +V+W+L H RCA+WASMGSGKTVSVL ALS I + + VL+IAPLRVAQ VW Sbjct: 5 LKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVW 64 Query: 63 TSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIV 122 EV+RWS FS M +S + G+ +QR K L TPA LY+INFEN+ WLV+ W FATIV Sbjct: 65 KDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIV 124 Query: 123 VDESTKLKSFRLRQGSKTARALAKPAWES-ERFIELTGTPSPNGLIDLWGQIWFLDKGKR 181 VDESTKLKSFR QG+K RAL K A+ +RFIELTGTPSPNGLIDLWGQIWFLDKGKR Sbjct: 125 VDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLDKGKR 184 Query: 182 LGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKE 217 LG F+SFV RWF+T Q+GS IGAV++ K AQKE Sbjct: 185 LGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE 220 >gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 573 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Query: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKS--------VLVI 52 +NL Q I++ L K + A GSGKTV+ AL+ L L I Sbjct: 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80 Query: 53 APLR 56 AP R Sbjct: 81 APTR 84 >gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter asiaticus str. psy62] Length = 890 Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust. Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%) Query: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52 + + P +++ ++ HK C G GKT++ + + Y++ K V V+ Sbjct: 82 LGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPV-YLNALSGKGVHVV 132 >gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 292 Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust. Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 14/114 (12%) Query: 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77 R + A +GS T + Y H G ++LV+ P + ++ R +H Sbjct: 69 SRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIP-------YYNKPNRRGLLAHFG- 120 Query: 78 SVITGTVKQRTKVLKTPAVLYV-INFENLGWLVQELKGTWPFATIVVDESTKLK 130 I TV + P+ + ++ + + EL T+P V D + K++ Sbjct: 121 -EIATTVSSPIYIYNNPSRTVIEMDVDTMA----ELAATYPNIVGVKDATGKIE 169 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust. Identities = 13/28 (46%), Positives = 16/28 (57%) Query: 211 KETAQKEIEAQLSDCCLSLDIADYQNID 238 KETAQK I+ QLS +L + ID Sbjct: 926 KETAQKLIDPQLSLEAAALKAGSFSQID 953 >gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus Liberibacter asiaticus str. psy62] Length = 133 Score = 23.9 bits (50), Expect = 5.1, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 395 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 454 E + ++E I RQ G VFVYYL+ + ++++ ++ LL +E Sbjct: 54 ESMEGVLEFIAHVRQMPLGTD--VFVYYLLMEVDFEKMIAG---ARAGANSFLLKPFNRE 108 Query: 455 TI 456 T+ Sbjct: 109 TL 110 >gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus str. psy62] Length = 503 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 8/26 (30%), Positives = 17/26 (65%) Query: 173 IWFLDKGKRLGRVFQSFVARWFNTTQ 198 ++ +DKGK+ +F+S + +W N + Sbjct: 477 LFTIDKGKKGADIFKSAIMQWENRSN 502 >gi|254780495|ref|YP_003064908.1| superoxide dismutase [Candidatus Liberibacter asiaticus str. psy62] Length = 205 Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 167 IDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQK 216 ID+W ++LD R +SF+ N + RY AQK Sbjct: 159 IDVWEHAYYLDFKYRRAHYIESFITNLVNWEYV-----CERYETAMLAQK 203 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.135 0.416 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 284,078 Number of Sequences: 1233 Number of extensions: 11472 Number of successful extensions: 42 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 29 Number of HSP's gapped (non-prelim): 16 length of query: 458 length of database: 328,796 effective HSP length: 77 effective length of query: 381 effective length of database: 233,855 effective search space: 89098755 effective search space used: 89098755 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)