BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus
Liberibacter asiaticus str. psy62]
(458 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764515|ref|YP_003065608.2| SNF2 related [Candidatus Liberibacter asiaticus str. psy62]
Length = 458
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/458 (100%), Positives = 458/458 (100%)
Query: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQS 60
MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQS
Sbjct: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQS 60
Query: 61 VWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFAT 120
VWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFAT
Sbjct: 61 VWTSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFAT 120
Query: 121 IVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGK 180
IVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGK
Sbjct: 121 IVVDESTKLKSFRLRQGSKTARALAKPAWESERFIELTGTPSPNGLIDLWGQIWFLDKGK 180
Query: 181 RLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP 240
RLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP
Sbjct: 181 RLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKEIEAQLSDCCLSLDIADYQNIDKP 240
Query: 241 ILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH 300
ILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH
Sbjct: 241 ILITKKVPLPQPVMKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKH 300
Query: 301 WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 360
WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG
Sbjct: 301 WKEVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG 360
Query: 361 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 420
KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV
Sbjct: 361 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 420
Query: 421 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 458
YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 421 YYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKETIHV 458
>gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 205
Score = 430 bits (1105), Expect = e-122, Method: Compositional matrix adjust.
Identities = 205/205 (100%), Positives = 205/205 (100%)
Query: 254 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 313
MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE
Sbjct: 1 MKQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHWKEVHDEKIKALE 60
Query: 314 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 373
VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG
Sbjct: 61 VIIEKANAAPIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120
Query: 374 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 433
HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV
Sbjct: 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELV 180
Query: 434 LQRLRTKSTIQDLLLNALKKETIHV 458
LQRLRTKSTIQDLLLNALKKETIHV
Sbjct: 181 LQRLRTKSTIQDLLLNALKKETIHV 205
>gi|254780129|ref|YP_003064542.1| hypothetical protein CLIBASIA_00040 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 220
Score = 286 bits (733), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 143/216 (66%), Positives = 166/216 (76%), Gaps = 1/216 (0%)
Query: 3 LAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVW 62
L PHQ +V+W+L H RCA+WASMGSGKTVSVL ALS I + + VL+IAPLRVAQ VW
Sbjct: 5 LKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVW 64
Query: 63 TSEVQRWSNFSHMNISVITGTVKQRTKVLKTPAVLYVINFENLGWLVQELKGTWPFATIV 122
EV+RWS FS M +S + G+ +QR K L TPA LY+INFEN+ WLV+ W FATIV
Sbjct: 65 KDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFENIPWLVKMKLDHWDFATIV 124
Query: 123 VDESTKLKSFRLRQGSKTARALAKPAWES-ERFIELTGTPSPNGLIDLWGQIWFLDKGKR 181
VDESTKLKSFR QG+K RAL K A+ +RFIELTGTPSPNGLIDLWGQIWFLDKGKR
Sbjct: 125 VDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLDKGKR 184
Query: 182 LGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQKE 217
LG F+SFV RWF+T Q+GS IGAV++ K AQKE
Sbjct: 185 LGLSFKSFVERWFHTQQVGSSIGAVKHIPKINAQKE 220
>gi|254780601|ref|YP_003065014.1| ATP-dependent RNA helicase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 573
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)
Query: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKS--------VLVI 52
+NL Q I++ L K + A GSGKTV+ AL+ L L I
Sbjct: 21 VNLTSVQEAILNPDLREKDVLVSAQTGSGKTVAFGLALASTLLAENDRFSPASAPLALAI 80
Query: 53 APLR 56
AP R
Sbjct: 81 APTR 84
>gi|254780327|ref|YP_003064740.1| preprotein translocase subunit SecA [Candidatus Liberibacter
asiaticus str. psy62]
Length = 890
Score = 25.4 bits (54), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 1 MNLAPHQTKIVDWILDHKRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVI 52
+ + P +++ ++ HK C G GKT++ + + Y++ K V V+
Sbjct: 82 LGMRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPV-YLNALSGKGVHVV 132
>gi|254780276|ref|YP_003064689.1| dihydrodipicolinate synthase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 292
Score = 25.0 bits (53), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 14/114 (12%)
Query: 18 KRCAIWASMGSGKTVSVLTALSYIHLWGEKSVLVIAPLRVAQSVWTSEVQRWSNFSHMNI 77
R + A +GS T + Y H G ++LV+ P + ++ R +H
Sbjct: 69 SRVPVMAGIGSNNTRESVELAQYAHSIGADALLVVIP-------YYNKPNRRGLLAHFG- 120
Query: 78 SVITGTVKQRTKVLKTPAVLYV-INFENLGWLVQELKGTWPFATIVVDESTKLK 130
I TV + P+ + ++ + + EL T+P V D + K++
Sbjct: 121 -EIATTVSSPIYIYNNPSRTVIEMDVDTMA----ELAATYPNIVGVKDATGKIE 169
>gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1040
Score = 24.3 bits (51), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 211 KETAQKEIEAQLSDCCLSLDIADYQNID 238
KETAQK I+ QLS +L + ID
Sbjct: 926 KETAQKLIDPQLSLEAAALKAGSFSQID 953
>gi|254780892|ref|YP_003065305.1| probable two-component response regulator protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 133
Score = 23.9 bits (50), Expect = 5.1, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 395 EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALKKE 454
E + ++E I RQ G VFVYYL+ + ++++ ++ LL +E
Sbjct: 54 ESMEGVLEFIAHVRQMPLGTD--VFVYYLLMEVDFEKMIAG---ARAGANSFLLKPFNRE 108
Query: 455 TI 456
T+
Sbjct: 109 TL 110
>gi|254780612|ref|YP_003065025.1| putative transmembrane protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 503
Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 173 IWFLDKGKRLGRVFQSFVARWFNTTQ 198
++ +DKGK+ +F+S + +W N +
Sbjct: 477 LFTIDKGKKGADIFKSAIMQWENRSN 502
>gi|254780495|ref|YP_003064908.1| superoxide dismutase [Candidatus Liberibacter asiaticus str. psy62]
Length = 205
Score = 23.9 bits (50), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 167 IDLWGQIWFLDKGKRLGRVFQSFVARWFNTTQIGSHIGAVRYTAKETAQK 216
ID+W ++LD R +SF+ N + RY AQK
Sbjct: 159 IDVWEHAYYLDFKYRRAHYIESFITNLVNWEYV-----CERYETAMLAQK 203
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.135 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,078
Number of Sequences: 1233
Number of extensions: 11472
Number of successful extensions: 42
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 16
length of query: 458
length of database: 328,796
effective HSP length: 77
effective length of query: 381
effective length of database: 233,855
effective search space: 89098755
effective search space used: 89098755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)