RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|255764516|ref|YP_003084344.1| hypothetical protein
CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62]
         (341 letters)



>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle
           domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 150

 Score = 26.7 bits (59), Expect = 3.2
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 247 QLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASATQEHTM 306
            L P   G LQ R        ++++    +IT       AYPS  ++  I+ S     T 
Sbjct: 72  ILKPIEDGPLQVRVWNPKIYAQDRSHRMPVIT------PAYPSMCATHNITES-----TK 120

Query: 307 AVSAENARKRWRIM 320
            V  +   +  +I 
Sbjct: 121 KVILQEFVRGVQIT 134


>d1kafa_ d.199.1.1 (A:) DNA-binding C-terminal domain of the
          transcription factor MotA {Bacteriophage T4 [TaxId:
          10665]}
          Length = 108

 Score = 26.1 bits (57), Expect = 4.5
 Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 5/34 (14%)

Query: 70 INNNNALRIF-----EGEKQTFKDFNIEVQKKVN 98
          INNN  +RIF     E   Q F D  +  +   N
Sbjct: 51 INNNGNMRIFGYKMMEHHIQKFTDIGMSCKIAKN 84


>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress
           (Arabidopsis thaliana), peroxidase N [TaxId: 3702]}
          Length = 300

 Score = 25.8 bits (56), Expect = 5.2
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 194 VVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSIF--DEIARQLTPR 251
           +V+  +     A    + SL  R+ F+D         CFV G D S+      + +L   
Sbjct: 17  IVRKQVAIALKAEIRMAASL-IRLHFHD---------CFVNGCDASLLLDGADSEKLAIP 66

Query: 252 FLGLLQGRTMVRSA-NLREKASIGDIITGDKIAYWAYPSENSSG 294
            +   +G  ++ +     E A  G +   D +   A  S   SG
Sbjct: 67  NINSARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSG 110


>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 207

 Score = 25.6 bits (56), Expect = 6.2
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 18/132 (13%)

Query: 120 QTEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTL---TLQLDDTRVDDTRGYDS 176
           Q + + + L  + LS  E L     ++ ++++  L+ D     T+++  T V        
Sbjct: 3   QVKKIDKYLYAMRLSD-ETLIDIMTRFRKEMKNGLSRDFNPTATVKMLPTFVRSIPDGSE 61

Query: 177 SIRFKDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGT 236
              F   D  LGGS  R+++  +              E     + + +VY   +  V G+
Sbjct: 62  KGDFIALD--LGGSSFRILRVQVNH------------EKNQNVHMESEVYDTPENIVHGS 107

Query: 237 DTSIFDEIARQL 248
            + +FD +A  L
Sbjct: 108 GSQLFDHVAECL 119


>d2a2ja1 b.45.1.1 (A:24-224) Pyridoxine 5'-phoshate oxidase (PNP
           oxidase) {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 201

 Score = 25.5 bits (55), Expect = 6.4
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 1   MMQYNFEQSKDVSYRLF-GSYFVIPWTVK----DPSRIHAEVKYPDGNMEELSP 49
            +   F     +      G Y + P  V+      +R+H  ++  +G +E L P
Sbjct: 148 EVTRRFADQDQIPVPPGWGGYRIAPEIVEFWQGRENRMHNRIRVANGRLERLQP 201


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,243,470
Number of extensions: 56046
Number of successful extensions: 159
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 9
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)