BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|255764516|ref|YP_003084344.1| hypothetical protein
CLIBASIA_05532 [Candidatus Liberibacter asiaticus str. psy62]
(341 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/341 (100%), Positives = 341/341 (100%)
Query: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES
Sbjct: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
Query: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ 120
SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ
Sbjct: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQKKVNQVNVLTQKMNTIDGIVNDLAIQ 120
Query: 121 TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF 180
TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF
Sbjct: 121 TEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDDTRVDDTRGYDSSIRF 180
Query: 181 KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240
KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI
Sbjct: 181 KDKDGALGGSITRVVKGDITGLSIATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240
Query: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300
FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA
Sbjct: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300
Query: 301 TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD 341
TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD
Sbjct: 301 TQEHTMAVSAENARKRWRIMGKTDSYYITLYWLQEVINFDD 341
>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 96.3 bits (238), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
M + NFEQ+K V+Y GS FVIPW +KDPSRIHAEV Y DG ++EL+ +DF VD +
Sbjct: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
Query: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114
L ++++ + +RIFEGEKQTFK++N + + K + L +++ ++ IV
Sbjct: 67 LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122
Query: 115 NDL 117
+DL
Sbjct: 123 SDL 125
>gi|254780432|ref|YP_003064845.1| acetylornithine transaminase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 392
Score = 26.6 bits (57), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 106 KMNTIDGIVNDLAIQTEDVGRKLEQIDL--SKVEGLDPQTRKYLQDIQTQLTSDTLTLQL 163
++ T +G + + T G KL+ ++ K+EG D LQ ++ Q+++DT + +
Sbjct: 123 RIVTFEGAFHGRTLATISAGGKLQYLEGFGPKIEGFDQAKFCDLQSLKNQISNDTAAILI 182
Query: 164 D 164
+
Sbjct: 183 E 183
>gi|254780990|ref|YP_003065403.1| hypothetical protein CLIBASIA_04455 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 66
Score = 25.8 bits (55), Expect = 1.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 40 PDGNMEELSPERDFKVDVDESSLILSSKRW 69
PD +++L E F+ D ++S L+L S W
Sbjct: 5 PDDGIDDLFEEDLFQYDANKSELVLISSLW 34
>gi|254780306|ref|YP_003064719.1| DNA topoisomerase I [Candidatus Liberibacter asiaticus str. psy62]
Length = 837
Score = 24.6 bits (52), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 112 GIVNDLAIQTEDVGRKLEQIDLSKVEGLDPQTRKYLQDIQTQLTSDTLTLQLDD 165
G + DL + G L + + + +DP ++K+LQ+I + S T+ + D
Sbjct: 30 GHIRDLPAKK---GSVLPEKEFEMIWNIDPSSQKHLQNIIHAVKSSTILILATD 80
>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
psy62]
Length = 375
Score = 24.3 bits (51), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 227 INGQCFVKGTDTSIFDEI 244
I Q F+ GTD S+FD +
Sbjct: 341 IGSQIFMTGTDKSVFDSL 358
>gi|254780979|ref|YP_003065392.1| aspartyl/glutamyl-tRNA amidotransferase subunit B [Candidatus
Liberibacter asiaticus str. psy62]
Length = 500
Score = 23.9 bits (50), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 41 DGNMEELSPERDFKVDVDESSLILSSKRWINNNNALRIF 79
DGNMEE S D V V ++ + N N++R
Sbjct: 208 DGNMEEGSMRADVNVSVCRPGEAWGTRCEVKNVNSIRFL 246
>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 423
Score = 23.5 bits (49), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 131 IDLSKVEGLDPQTRKYLQDIQTQLTSDT 158
IDLS + G P R DI+T +++ T
Sbjct: 135 IDLSSLSGSGPHGRIVKSDIETLISTKT 162
>gi|254780355|ref|YP_003064768.1| type II citrate synthase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 429
Score = 23.1 bits (48), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 18/135 (13%)
Query: 183 KDGALGGSITRVVKGDITGLSI--ATKNKSGSLENRIKFYDDKDVYINGQCFVKGTDTSI 240
K+G+LG S+ + G+ + + S +++I F D NG +G
Sbjct: 20 KEGSLGSSVLDISFLHKNGIFTYDPAFSSTASCKSKITFIDGN----NGILLYRGYPIEQ 75
Query: 241 FDEIARQLTPRFLGLLQGRTMVRSANLREKASIGDIITGDKIAYWAYPSENSSGYISASA 300
E + L +L LL G AN+ ++ D KI+ A +EN S +
Sbjct: 76 LSEKSDFLEVCYL-LLHGEL----ANVSQQKDFND-----KISRHALLNENMSRFFMGFP 125
Query: 301 TQEHTMA--VSAENA 313
+ H MA VSA A
Sbjct: 126 SSAHPMAMLVSAVGA 140
>gi|254780206|ref|YP_003064619.1| phosphoribosylamine--glycine ligase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 424
Score = 23.1 bits (48), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 230 QCFVKGTDTSIFDEIARQLTPRFLGLLQGRTMVRSANLREKASIGD 275
+CF + T I +E F L G+T + R+ I D
Sbjct: 168 RCFQQINSTVIIEEYLEGFEVSFFALCDGKTAIPFTTARDHKRIHD 213
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 22.7 bits (47), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 57 VDESSLILSSKRWINNNN 74
V + I+ SK W NNNN
Sbjct: 185 VKDKKSIIPSKTWTNNNN 202
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 212,326
Number of Sequences: 1233
Number of extensions: 8493
Number of successful extensions: 38
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 18
length of query: 341
length of database: 328,796
effective HSP length: 75
effective length of query: 266
effective length of database: 236,321
effective search space: 62861386
effective search space used: 62861386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)