Query gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 135 No_of_seqs 2 out of 4 Neff 1.3 Searched_HMMs 33803 Date Wed Jun 1 23:29:41 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 255764517.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2vdu_B TRNA (guanine-N(7)-)-m 35.0 23 0.00068 17.1 2.0 51 63-113 84-152 (170) 2 >2gop_A Trilobed protease; bet 34.6 28 0.00084 16.6 2.4 40 58-97 108-147 (149) 3 >3c4h_A Poly(ADP-ribose) polym 29.6 13 0.00039 18.5 0.0 45 85-129 5-49 (106) 4 >1wxr_A Haemoglobin protease; 28.7 30 0.0009 16.4 1.8 51 62-112 115-179 (726) 5 >1r0k_A 1-deoxy-D-xylulose 5-p 26.5 10 0.0003 19.3 -1.0 49 19-67 75-124 (169) 6 >1q0q_A 1-deoxy-D-xylulose 5-p 21.6 15 0.00043 18.3 -1.0 43 19-61 95-138 (161) 7 >2qe8_A Uncharacterized protei 17.8 76 0.0022 14.0 3.9 52 25-82 28-80 (146) 8 >2p4o_A Hypothetical protein; 17.4 77 0.0023 14.0 3.7 58 24-86 43-101 (163) 9 >1tq5_A Protein YHHW; bicupin, 16.7 28 0.00083 16.6 -0.4 60 30-89 19-88 (114) 10 >3kjd_A Poly [ADP-ribose] poly 14.9 89 0.0026 13.6 2.9 40 85-124 5-44 (104) No 1 >>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} (B:1-74,B:355-450) Probab=34.95 E-value=23 Score=17.13 Aligned_cols=51 Identities=24% Similarity=0.499 Sum_probs=33.2 Q ss_pred CCCEEEEEECCCCC-----EEEE--EECCHHHHH-------HHCC----CCCCCCCCCCHHHHHHHHHH Q ss_conf 21027998527787-----8889--635723455-------4134----44111111101100011464 Q gi|255764517|r 63 GLNALLTVNNREGD-----FIRI--FEGEKQTFK-------EYNS----DSPRAPHNLVKEADLYPLHN 113 (135) Q Consensus 63 ~~~a~L~~~~r~~~-----~iRI--FEGEKQTFK-------~~N~----~~~raphnlvK~~~~~~L~~ 113 (135) .++-++++.||+.+ |+.+ |.|++-+|- +|+. -...-|--.|+..++|||-+ T Consensus 84 ~d~~~itlDNres~~~~k~fvkfi~y~~~~~~f~~~~e~~~~~~~~i~~s~~~d~~v~v~~~dvypLY~ 152 (170) T 2vdu_B 84 NDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYN 152 (170) T ss_dssp TTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEECHHHHHHHHHHHHHHHTTCTTTEECGGGSCCCCC T ss_pred CCCEEEEEECCCCCEEEECCCCEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCEEEEE T ss_conf 999799998788836874135179885478638764133688766599924999489982778589998 No 2 >>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} (A:1-102,A:301-347) Probab=34.61 E-value=28 Score=16.58 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=33.5 Q ss_pred CCCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHCCCCCC Q ss_conf 3322121027998527787888963572345541344411 Q gi|255764517|r 58 DFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPR 97 (135) Q Consensus 58 DF~VD~~~a~L~~~~r~~~~iRIFEGEKQTFK~~N~~~~r 97 (135) -|+||+.-..|.-++-+-.-+-+.+||-+-..+||+.+.+ T Consensus 108 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~t~~~~~~~~ 147 (149) T 2gop_A 108 GFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDPIFA 147 (149) T ss_dssp EEEESSSEEEEEECSSSCCEEEEESSSEEECCCTTSTTTS T ss_pred EEEECCCEEEEEECCCCCCEEEEECCCEEEECCCCHHHHH T ss_conf 8855893999993799944799999977894006988874 No 3 >>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural genomics, structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* (A:24-129) Probab=29.60 E-value=13 Score=18.55 Aligned_cols=45 Identities=13% Similarity=0.169 Sum_probs=35.4 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 234554134441111111011000114644213778997567678 Q gi|255764517|r 85 KQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDLNNMK 129 (135) Q Consensus 85 KQTFK~~N~~~~raphnlvK~~~~~~L~~r~~~v~~IV~DLnnmk 129 (135) +++.+++++|.++.|-.-....++.--..-|+.+..++.+.+..+ T Consensus 5 ~~~m~e~~~D~~kmPLGkLsk~qI~~g~~vL~~l~~~i~~~~~~~ 49 (106) T 3c4h_A 5 KNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDGG 49 (106) T ss_dssp HHHHHHTTBCTTTSCTTTCCHHHHHHHHHHHHHHHHHHTSCCCSC T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH T ss_conf 999998299920178753899999999999999999985755107 No 4 >>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} (A:257-490,A:557-1048) Probab=28.72 E-value=30 Score=16.39 Aligned_cols=51 Identities=27% Similarity=0.272 Sum_probs=39.3 Q ss_pred CCCCEEEEEECCC--------CCEEEEE------ECCHHHHHHHCCCCCCCCCCCCHHHHHHHHH Q ss_conf 1210279985277--------8788896------3572345541344411111110110001146 Q gi|255764517|r 62 DGLNALLTVNNRE--------GDFIRIF------EGEKQTFKEYNSDSPRAPHNLVKEADLYPLH 112 (135) Q Consensus 62 D~~~a~L~~~~r~--------~~~iRIF------EGEKQTFK~~N~~~~raphnlvK~~~~~~L~ 112 (135) ..-+--|+++.+- ||-.-|+ .|+||.|.+-.+-|-|+.--|-...|+.|.. T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (726) T 1wxr_A 115 KIGEGTLTVQGTGINEGGLKVGDGKVVLNQQADNKGQVQAFSSVNIASGRPTVVLTDERQVNPDT 179 (726) T ss_dssp EESSSEEEECCBSBCCSEEEECSSEEEECCBCCTTSCCBSCSCEEECSSCCEEEESSTTSSCGGG T ss_pred EEEEEEEEEECCCCCCCCEEECCCEEEEECCCCCCCCEEEECCEEEEECCCEEEECCCCCCCCCC T ss_conf 72146899955322225168524479981223445612560320475033159852442102554 No 5 >>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} (A:151-319) Probab=26.51 E-value=10 Score=19.27 Aligned_cols=49 Identities=20% Similarity=0.127 Sum_probs=31.9 Q ss_pred EEEEEEC-EEEEEEECCCHHHEEEECCCCCCCEEEECCCCCCCCCCCCEE Q ss_conf 6888603-678876318911311231578883100050023322121027 Q gi|255764517|r 19 TYWAVGS-KFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNAL 67 (135) Q Consensus 19 tY~~~GS-~FVIPW~iKDPSRIHAEV~Y~DG~~~ELa~~~DF~VD~~~a~ 67 (135) .+|+||- +=-|---|.--|-||+-|.|.||-+---.-.-|.+.--..|+ T Consensus 75 A~~LF~~~~~~I~vvIHpqSiVHsmV~f~DGs~~a~~~~pDMr~pI~yaL 124 (169) T 1r0k_A 75 AFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTL 124 (169) T ss_dssp HHHHHCCCGGGEEEEECTTCCEEEEEEETTSCEEEEECCSCTHHHHHHHH T ss_pred HHHHHCCCHHHEEEEECCCCEEEEEEEECCCCEEHHCCHHHHHHHHHHHH T ss_conf 99997998899788865563567899974987731401787999999985 No 6 >>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} (A:149-309) Probab=21.56 E-value=15 Score=18.30 Aligned_cols=43 Identities=26% Similarity=0.312 Sum_probs=27.8 Q ss_pred EEEEEECEE-EEEEECCCHHHEEEECCCCCCCEEEECCCCCCCC Q ss_conf 688860367-8876318911311231578883100050023322 Q gi|255764517|r 19 TYWAVGSKF-VIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDV 61 (135) Q Consensus 19 tY~~~GS~F-VIPW~iKDPSRIHAEV~Y~DG~~~ELa~~~DF~V 61 (135) .+|+|+-.+ -|---|.--|-||+-|.|.||-+--..-.-|.+. T Consensus 95 A~~LF~~~~~~I~vvIHpqSiiHsmV~f~DGsv~aql~~pDMr~ 138 (161) T 1q0q_A 95 ARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRT 138 (161) T ss_dssp HHHHHTCCGGGEEEEECTTCCEEEEEEETTSCEEEEECCSCTHH T ss_pred HHHHHCCCHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHH T ss_conf 99996888666898746887799999966975330057753323 No 7 >>2qe8_A Uncharacterized protein; YP_324691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} (A:117-167,A:195-289) Probab=17.81 E-value=76 Score=14.02 Aligned_cols=52 Identities=13% Similarity=0.123 Sum_probs=30.2 Q ss_pred CEEEEEEECCCHHHEEEECCCCCC-CEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEE Q ss_conf 367887631891131123157888-3100050023322121027998527787888963 Q gi|255764517|r 25 SKFVIPWDIKDPSRIHAEVGYSDG-RVQELAISQDFDVDGLNALLTVNNREGDFIRIFE 82 (135) Q Consensus 25 S~FVIPW~iKDPSRIHAEV~Y~DG-~~~ELa~~~DF~VD~~~a~L~~~~r~~~~iRIFE 82 (135) ...++-||+..-..++.--+.+.. ....++.+. +...|.+.+..++.+++|. T Consensus 28 d~~i~~wd~~~~~~~~~~~~h~~~~~p~~ia~SP------DG~~l~va~~~~~~~~~~~ 80 (146) T 2qe8_A 28 KAALIRVDLQTGLAARVLQGYPGILGVNGIVLDA------ENEWLYLSPXHSTSXYRIK 80 (146) T ss_dssp GCEEEEEETTTCCEEEECTTCTTTCCEEEEEECT------TSCEEEEEESSCSEEEEEE T ss_pred CCCEEEEEECCCCEEEEECCCCEECCCCCEEECC------CCCEEEEEECCCCEEEEEE T ss_conf 7523788704892677740441006888436769------9996999968999699863 No 8 >>2p4o_A Hypothetical protein; ZP_00111901.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.90A {Nostoc punctiforme pcc 73102} (A:1-70,A:214-306) Probab=17.39 E-value=77 Score=13.96 Aligned_cols=58 Identities=24% Similarity=0.287 Sum_probs=42.5 Q ss_pred ECEEEEEEECCCHHHEEEECCCCCCCEEEECC-CCCCCCCCCCEEEEEECCCCCEEEEEECCHH Q ss_conf 03678876318911311231578883100050-0233221210279985277878889635723 Q gi|255764517|r 24 GSKFVIPWDIKDPSRIHAEVGYSDGRVQELAI-SQDFDVDGLNALLTVNNREGDFIRIFEGEKQ 86 (135) Q Consensus 24 GS~FVIPW~iKDPSRIHAEV~Y~DG~~~ELa~-~~DF~VD~~~a~L~~~~r~~~~iRIFEGEKQ 86 (135) |.-||--+++-.--|| -|||+.|+++- --+|.+|.+-.+.+-..-.|..+|+=..-+. T Consensus 43 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~PDG~avD~eG~lWvA~~~gg~VvrisP~G~~ 101 (163) T 2p4o_A 43 GTIFVTNHEVGEIVSI-----TPDGNQQIHATVIDDFAFDVEGNLYGATHIYNSVVRIAPDRST 101 (163) T ss_dssp SCEEEEETTTTEEEEE-----CTTCCEEEEEECCSSEEEBTTCCEEEECBTTCCEEEECTTCCE T ss_pred CCEEEEECCCCEEEEE-----CCCCCEEEEECCCCCCEECCCCCEEEEECCCCEEEEECCCCCE T ss_conf 8699995899959999-----7999779987788762386999999996589808998789988 No 9 >>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} (A:1-8,A:137-242) Probab=16.72 E-value=28 Score=16.60 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=38.4 Q ss_pred EEECCCHHHEEEECCCCCCCEE-----EECCCCCCC--CCCCCEEEEEECCC---CCEEEEEECCHHHHH Q ss_conf 7631891131123157888310-----005002332--21210279985277---878889635723455 Q gi|255764517|r 30 PWDIKDPSRIHAEVGYSDGRVQ-----ELAISQDFD--VDGLNALLTVNNRE---GDFIRIFEGEKQTFK 89 (135) Q Consensus 30 PW~iKDPSRIHAEV~Y~DG~~~-----ELa~~~DF~--VD~~~a~L~~~~r~---~~~iRIFEGEKQTFK 89 (135) ++..+.|-.+|..+-|.|.+++ ++.+..++. +-+.+-.+.++... ++++++-+|+.-+++ T Consensus 19 ~~G~~~pi~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~iyv~~G~v~i~g~~l~~gd~~~~~~~~~i~i~ 88 (114) T 1tq5_A 19 PDARDGSLKVHQDXELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIH 88 (114) T ss_dssp SSCGGGCEECSSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEETTEEEETTCEEEEESCSCEEEE T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCEEEEEEEEEEEEECCEECCCCCEEEECCCCEEEEE T ss_conf 4434487423477278887805785089604665339999977789999998367885998689849999 No 10 >>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, structural genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A (A:37-140) Probab=14.94 E-value=89 Score=13.59 Aligned_cols=40 Identities=15% Similarity=0.225 Sum_probs=32.7 Q ss_pred HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 2345541344411111110110001146442137789975 Q gi|255764517|r 85 KQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSD 124 (135) Q Consensus 85 KQTFK~~N~~~~raphnlvK~~~~~~L~~r~~~v~~IV~D 124 (135) +++.+++++|..+.|-.-...+|+.--..-|..++.++.. T Consensus 5 ~~~l~e~~~D~~kmPLGkLS~~qI~~a~~vL~~l~~~i~~ 44 (104) T 3kjd_A 5 EEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRA 44 (104) T ss_dssp HHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 9999982888211896326899999999999999999855 Done!