Query         gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 135
No_of_seqs    2 out of 4
Neff          1.3 
Searched_HMMs 33803
Date          Wed Jun  1 23:29:41 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 255764517.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2vdu_B TRNA (guanine-N(7)-)-m  35.0      23 0.00068   17.1   2.0   51   63-113    84-152 (170)
  2 >2gop_A Trilobed protease; bet  34.6      28 0.00084   16.6   2.4   40   58-97    108-147 (149)
  3 >3c4h_A Poly(ADP-ribose) polym  29.6      13 0.00039   18.5   0.0   45   85-129     5-49  (106)
  4 >1wxr_A Haemoglobin protease;   28.7      30  0.0009   16.4   1.8   51   62-112   115-179 (726)
  5 >1r0k_A 1-deoxy-D-xylulose 5-p  26.5      10  0.0003   19.3  -1.0   49   19-67     75-124 (169)
  6 >1q0q_A 1-deoxy-D-xylulose 5-p  21.6      15 0.00043   18.3  -1.0   43   19-61     95-138 (161)
  7 >2qe8_A Uncharacterized protei  17.8      76  0.0022   14.0   3.9   52   25-82     28-80  (146)
  8 >2p4o_A Hypothetical protein;   17.4      77  0.0023   14.0   3.7   58   24-86     43-101 (163)
  9 >1tq5_A Protein YHHW; bicupin,  16.7      28 0.00083   16.6  -0.4   60   30-89     19-88  (114)
 10 >3kjd_A Poly [ADP-ribose] poly  14.9      89  0.0026   13.6   2.9   40   85-124     5-44  (104)

No 1  
>>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} (B:1-74,B:355-450)
Probab=34.95  E-value=23  Score=17.13  Aligned_cols=51  Identities=24%  Similarity=0.499  Sum_probs=33.2

Q ss_pred             CCCEEEEEECCCCC-----EEEE--EECCHHHHH-------HHCC----CCCCCCCCCCHHHHHHHHHH
Q ss_conf             21027998527787-----8889--635723455-------4134----44111111101100011464
Q gi|255764517|r   63 GLNALLTVNNREGD-----FIRI--FEGEKQTFK-------EYNS----DSPRAPHNLVKEADLYPLHN  113 (135)
Q Consensus        63 ~~~a~L~~~~r~~~-----~iRI--FEGEKQTFK-------~~N~----~~~raphnlvK~~~~~~L~~  113 (135)
                      .++-++++.||+.+     |+.+  |.|++-+|-       +|+.    -...-|--.|+..++|||-+
T Consensus        84 ~d~~~itlDNres~~~~k~fvkfi~y~~~~~~f~~~~e~~~~~~~~i~~s~~~d~~v~v~~~dvypLY~  152 (170)
T 2vdu_B           84 NDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFVVNNEKSNEFDSAIIQSVQGDSNLVTKKEEIYPLYN  152 (170)
T ss_dssp             TTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEEECHHHHHHHHHHHHHHHTTCTTTEECGGGSCCCCC
T ss_pred             CCCEEEEEECCCCCEEEECCCCEEEEECCCCEEEEECCCCCCCCCEEEEECCCCCEEEEECCCCEEEEE
T ss_conf             999799998788836874135179885478638764133688766599924999489982778589998


No 2  
>>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} (A:1-102,A:301-347)
Probab=34.61  E-value=28  Score=16.58  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=33.5

Q ss_pred             CCCCCCCCEEEEEECCCCCEEEEEECCHHHHHHHCCCCCC
Q ss_conf             3322121027998527787888963572345541344411
Q gi|255764517|r   58 DFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPR   97 (135)
Q Consensus        58 DF~VD~~~a~L~~~~r~~~~iRIFEGEKQTFK~~N~~~~r   97 (135)
                      -|+||+.-..|.-++-+-.-+-+.+||-+-..+||+.+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~t~~~~~~~~  147 (149)
T 2gop_A          108 GFDVDEIVVYLKETATRLRELFTWDGEEKQLTDYNDPIFA  147 (149)
T ss_dssp             EEEESSSEEEEEECSSSCCEEEEESSSEEECCCTTSTTTS
T ss_pred             EEEECCCEEEEEECCCCCCEEEEECCCEEEECCCCHHHHH
T ss_conf             8855893999993799944799999977894006988874


No 3  
>>3c4h_A Poly(ADP-ribose) polymerase 3; enzyme-inhibitor complex, catalytic fragment, structural genomics, structural genomics consortium, SGC; HET: DRL; 2.10A {Homo sapiens} PDB: 3c49_A* 2pa9_A* 3ce0_A* 3fhb_A* (A:24-129)
Probab=29.60  E-value=13  Score=18.55  Aligned_cols=45  Identities=13%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             234554134441111111011000114644213778997567678
Q gi|255764517|r   85 KQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDLNNMK  129 (135)
Q Consensus        85 KQTFK~~N~~~~raphnlvK~~~~~~L~~r~~~v~~IV~DLnnmk  129 (135)
                      +++.+++++|.++.|-.-....++.--..-|+.+..++.+.+..+
T Consensus         5 ~~~m~e~~~D~~kmPLGkLsk~qI~~g~~vL~~l~~~i~~~~~~~   49 (106)
T 3c4h_A            5 KNTMALMDLDVKKMPLGKLSKQQIARGFEALEALEEALKGPTDGG   49 (106)
T ss_dssp             HHHHHHTTBCTTTSCTTTCCHHHHHHHHHHHHHHHHHHTSCCCSC
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf             999998299920178753899999999999999999985755107


No 4  
>>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} (A:257-490,A:557-1048)
Probab=28.72  E-value=30  Score=16.39  Aligned_cols=51  Identities=27%  Similarity=0.272  Sum_probs=39.3

Q ss_pred             CCCCEEEEEECCC--------CCEEEEE------ECCHHHHHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             1210279985277--------8788896------3572345541344411111110110001146
Q gi|255764517|r   62 DGLNALLTVNNRE--------GDFIRIF------EGEKQTFKEYNSDSPRAPHNLVKEADLYPLH  112 (135)
Q Consensus        62 D~~~a~L~~~~r~--------~~~iRIF------EGEKQTFK~~N~~~~raphnlvK~~~~~~L~  112 (135)
                      ..-+--|+++.+-        ||-.-|+      .|+||.|.+-.+-|-|+.--|-...|+.|..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (726)
T 1wxr_A          115 KIGEGTLTVQGTGINEGGLKVGDGKVVLNQQADNKGQVQAFSSVNIASGRPTVVLTDERQVNPDT  179 (726)
T ss_dssp             EESSSEEEECCBSBCCSEEEECSSEEEECCBCCTTSCCBSCSCEEECSSCCEEEESSTTSSCGGG
T ss_pred             EEEEEEEEEECCCCCCCCEEECCCEEEEECCCCCCCCEEEECCEEEEECCCEEEECCCCCCCCCC
T ss_conf             72146899955322225168524479981223445612560320475033159852442102554


No 5  
>>1r0k_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH dependent, fosmidomycin, non- mevalonate pathway, oxidoreductase; 1.91A {Zymomonas mobilis} (A:151-319)
Probab=26.51  E-value=10  Score=19.27  Aligned_cols=49  Identities=20%  Similarity=0.127  Sum_probs=31.9

Q ss_pred             EEEEEEC-EEEEEEECCCHHHEEEECCCCCCCEEEECCCCCCCCCCCCEE
Q ss_conf             6888603-678876318911311231578883100050023322121027
Q gi|255764517|r   19 TYWAVGS-KFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNAL   67 (135)
Q Consensus        19 tY~~~GS-~FVIPW~iKDPSRIHAEV~Y~DG~~~ELa~~~DF~VD~~~a~   67 (135)
                      .+|+||- +=-|---|.--|-||+-|.|.||-+---.-.-|.+.--..|+
T Consensus        75 A~~LF~~~~~~I~vvIHpqSiVHsmV~f~DGs~~a~~~~pDMr~pI~yaL  124 (169)
T 1r0k_A           75 AFHLFQIPLEKFEILVHPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTL  124 (169)
T ss_dssp             HHHHHCCCGGGEEEEECTTCCEEEEEEETTSCEEEEECCSCTHHHHHHHH
T ss_pred             HHHHHCCCHHHEEEEECCCCEEEEEEEECCCCEEHHCCHHHHHHHHHHHH
T ss_conf             99997998899788865563567899974987731401787999999985


No 6  
>>1q0q_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; oxidoreductase; HET: DXP NDP; 1.90A {Escherichia coli} (A:149-309)
Probab=21.56  E-value=15  Score=18.30  Aligned_cols=43  Identities=26%  Similarity=0.312  Sum_probs=27.8

Q ss_pred             EEEEEECEE-EEEEECCCHHHEEEECCCCCCCEEEECCCCCCCC
Q ss_conf             688860367-8876318911311231578883100050023322
Q gi|255764517|r   19 TYWAVGSKF-VIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDV   61 (135)
Q Consensus        19 tY~~~GS~F-VIPW~iKDPSRIHAEV~Y~DG~~~ELa~~~DF~V   61 (135)
                      .+|+|+-.+ -|---|.--|-||+-|.|.||-+--..-.-|.+.
T Consensus        95 A~~LF~~~~~~I~vvIHpqSiiHsmV~f~DGsv~aql~~pDMr~  138 (161)
T 1q0q_A           95 ARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRT  138 (161)
T ss_dssp             HHHHHTCCGGGEEEEECTTCCEEEEEEETTSCEEEEECCSCTHH
T ss_pred             HHHHHCCCHHHEEEEECCCCEEEEEEEECCCCCCCCCCCCCCHH
T ss_conf             99996888666898746887799999966975330057753323


No 7  
>>2qe8_A Uncharacterized protein; YP_324691.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} (A:117-167,A:195-289)
Probab=17.81  E-value=76  Score=14.02  Aligned_cols=52  Identities=13%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             CEEEEEEECCCHHHEEEECCCCCC-CEEEECCCCCCCCCCCCEEEEEECCCCCEEEEEE
Q ss_conf             367887631891131123157888-3100050023322121027998527787888963
Q gi|255764517|r   25 SKFVIPWDIKDPSRIHAEVGYSDG-RVQELAISQDFDVDGLNALLTVNNREGDFIRIFE   82 (135)
Q Consensus        25 S~FVIPW~iKDPSRIHAEV~Y~DG-~~~ELa~~~DF~VD~~~a~L~~~~r~~~~iRIFE   82 (135)
                      ...++-||+..-..++.--+.+.. ....++.+.      +...|.+.+..++.+++|.
T Consensus        28 d~~i~~wd~~~~~~~~~~~~h~~~~~p~~ia~SP------DG~~l~va~~~~~~~~~~~   80 (146)
T 2qe8_A           28 KAALIRVDLQTGLAARVLQGYPGILGVNGIVLDA------ENEWLYLSPXHSTSXYRIK   80 (146)
T ss_dssp             GCEEEEEETTTCCEEEECTTCTTTCCEEEEEECT------TSCEEEEEESSCSEEEEEE
T ss_pred             CCCEEEEEECCCCEEEEECCCCEECCCCCEEECC------CCCEEEEEECCCCEEEEEE
T ss_conf             7523788704892677740441006888436769------9996999968999699863


No 8  
>>2p4o_A Hypothetical protein; ZP_00111901.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.90A {Nostoc punctiforme pcc 73102} (A:1-70,A:214-306)
Probab=17.39  E-value=77  Score=13.96  Aligned_cols=58  Identities=24%  Similarity=0.287  Sum_probs=42.5

Q ss_pred             ECEEEEEEECCCHHHEEEECCCCCCCEEEECC-CCCCCCCCCCEEEEEECCCCCEEEEEECCHH
Q ss_conf             03678876318911311231578883100050-0233221210279985277878889635723
Q gi|255764517|r   24 GSKFVIPWDIKDPSRIHAEVGYSDGRVQELAI-SQDFDVDGLNALLTVNNREGDFIRIFEGEKQ   86 (135)
Q Consensus        24 GS~FVIPW~iKDPSRIHAEV~Y~DG~~~ELa~-~~DF~VD~~~a~L~~~~r~~~~iRIFEGEKQ   86 (135)
                      |.-||--+++-.--||     -|||+.|+++- --+|.+|.+-.+.+-..-.|..+|+=..-+.
T Consensus        43 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~PDG~avD~eG~lWvA~~~gg~VvrisP~G~~  101 (163)
T 2p4o_A           43 GTIFVTNHEVGEIVSI-----TPDGNQQIHATVIDDFAFDVEGNLYGATHIYNSVVRIAPDRST  101 (163)
T ss_dssp             SCEEEEETTTTEEEEE-----CTTCCEEEEEECCSSEEEBTTCCEEEECBTTCCEEEECTTCCE
T ss_pred             CCEEEEECCCCEEEEE-----CCCCCEEEEECCCCCCEECCCCCEEEEECCCCEEEEECCCCCE
T ss_conf             8699995899959999-----7999779987788762386999999996589808998789988


No 9  
>>1tq5_A Protein YHHW; bicupin, pirin, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, unknown function; 1.76A {Escherichia coli} (A:1-8,A:137-242)
Probab=16.72  E-value=28  Score=16.60  Aligned_cols=60  Identities=12%  Similarity=0.176  Sum_probs=38.4

Q ss_pred             EEECCCHHHEEEECCCCCCCEE-----EECCCCCCC--CCCCCEEEEEECCC---CCEEEEEECCHHHHH
Q ss_conf             7631891131123157888310-----005002332--21210279985277---878889635723455
Q gi|255764517|r   30 PWDIKDPSRIHAEVGYSDGRVQ-----ELAISQDFD--VDGLNALLTVNNRE---GDFIRIFEGEKQTFK   89 (135)
Q Consensus        30 PW~iKDPSRIHAEV~Y~DG~~~-----ELa~~~DF~--VD~~~a~L~~~~r~---~~~iRIFEGEKQTFK   89 (135)
                      ++..+.|-.+|..+-|.|.+++     ++.+..++.  +-+.+-.+.++...   ++++++-+|+.-+++
T Consensus        19 ~~G~~~pi~~~~~~~~~~i~l~~g~~~~~~~~~~~~~~iyv~~G~v~i~g~~l~~gd~~~~~~~~~i~i~   88 (114)
T 1tq5_A           19 PDARDGSLKVHQDXELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIH   88 (114)
T ss_dssp             SSCGGGCEECSSSCEEEEEEECTTCEEEECCCTTCEEEEEEEESEEEETTEEEETTCEEEEESCSCEEEE
T ss_pred             CCCCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCEEEEEEEEEEEEECCEECCCCCEEEECCCCEEEEE
T ss_conf             4434487423477278887805785089604665339999977789999998367885998689849999


No 10 
>>3kjd_A Poly [ADP-ribose] polymerase 2; transferase, enzyme-inhibitor complex, catalytic fragment, structural genomics, structural genomics consortium, SGC; HET: 78P; 1.95A {Homo sapiens} PDB: 3kcz_A* 1gs0_A (A:37-140)
Probab=14.94  E-value=89  Score=13.59  Aligned_cols=40  Identities=15%  Similarity=0.225  Sum_probs=32.7

Q ss_pred             HHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2345541344411111110110001146442137789975
Q gi|255764517|r   85 KQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSD  124 (135)
Q Consensus        85 KQTFK~~N~~~~raphnlvK~~~~~~L~~r~~~v~~IV~D  124 (135)
                      +++.+++++|..+.|-.-...+|+.--..-|..++.++..
T Consensus         5 ~~~l~e~~~D~~kmPLGkLS~~qI~~a~~vL~~l~~~i~~   44 (104)
T 3kjd_A            5 EEMMMEMKYNTKKAPLGKLTVAQIKAGYQSLKKIEDCIRA   44 (104)
T ss_dssp             HHHHHHTTBCTTTSCGGGCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999982888211896326899999999999999999855


Done!