BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|255764517|ref|YP_003084345.1| hypothetical protein
CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
(135 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|317120667|gb|ADV02490.1| hypothetical protein SC1_gp025 [Liberibacter phage SC1]
gi|317120811|gb|ADV02632.1| hypothetical protein SC1_gp025 [Candidatus Liberibacter asiaticus]
Length = 707
Score = 292 bits (748), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 134/135 (99%), Positives = 135/135 (100%)
Query: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD
Sbjct: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
Query: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET
Sbjct: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
Query: 121 IVSDLNNMKNRIQDL 135
IVSDLNNMKNRIQ+L
Sbjct: 121 IVSDLNNMKNRIQEL 135
>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
asiaticus str. psy62]
gi|307601368|gb|ACT66821.3| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 280 bits (716), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD
Sbjct: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
Query: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET
Sbjct: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
Query: 121 IVSDLNNMKNRIQDL 135
IVSDLNNMKNRIQDL
Sbjct: 121 IVSDLNNMKNRIQDL 135
>gi|315122307|ref|YP_004062796.1| hypothetical protein CKC_02795 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495709|gb|ADR52308.1| hypothetical protein CKC_02795 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 176
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Query: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
M K NFEQ KSV+Y + S+FVIPW+I+D +IHAEV SDGR EL + DF+VD +
Sbjct: 1 MVKRNFEQDKSVSYSLLTSRFVIPWEIEDYRKIHAEVETSDGRRNELVLEDDFEVDCEDN 60
Query: 67 LLTVNNRE-GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVE 119
LT+ N + +RI++GEKQ K + ++PHNL++ DL P++ RL+ +E
Sbjct: 61 FLTLKNTDLKGILRIYDGEKQELKYSIDPNIQSPHNLLRYGDLSPIYLRLENLE 114
>gi|317120708|gb|ADV02530.1| hypothetical protein SC2_gp020 [Liberibacter phage SC2]
gi|317120769|gb|ADV02590.1| hypothetical protein SC2_gp020 [Candidatus Liberibacter asiaticus]
Length = 280
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
M + NFEQ+K V+Y GS FVIPW +KDPSRIHAEV Y DG ++EL+ +DF VD +
Sbjct: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
Query: 67 LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122
L ++++ + +RIFEGEKQTFK++N + + K + L +++ ++ IV
Sbjct: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114
Query: 123 SDL 125
+DL
Sbjct: 115 NDL 117
>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254547867|gb|ACT66820.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
M + NFEQ+K V+Y GS FVIPW +KDPSRIHAEV Y DG ++EL+ +DF VD +
Sbjct: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
Query: 67 LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122
L ++++ + +RIFEGEKQTFK++N + + K + L +++ ++ IV
Sbjct: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114
Query: 123 SDL 125
+DL
Sbjct: 115 NDL 117
>gi|317120750|gb|ADV02572.1| hypothetical protein SC2_gp260 [Liberibacter phage SC2]
gi|317120764|gb|ADV02585.1| hypothetical protein SC2_gp260 [Candidatus Liberibacter asiaticus]
Length = 51
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/25 (88%), Positives = 24/25 (96%)
Query: 111 LHNRLDGVETIVSDLNNMKNRIQDL 135
+H RLDGVETIVSDLNNMKNRIQ+L
Sbjct: 1 MHTRLDGVETIVSDLNNMKNRIQEL 25
>gi|315121953|ref|YP_004062442.1| hypothetical protein CKC_01015 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122920|ref|YP_004063409.1| hypothetical protein CKC_05880 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495355|gb|ADR51954.1| hypothetical protein CKC_01015 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496322|gb|ADR52921.1| hypothetical protein CKC_05880 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 521
Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 17 SVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVD---GLNALLTVNNR 73
S++Y S ++IPW+ DP+ +HAE + + L ++F VD G+ LLT N
Sbjct: 12 SISYVCTTSYYIIPWNFDDPTTVHAEFVKGE-ESKPLEYGEEFTVDCDEGMLTLLTDYNN 70
Query: 74 EGDFIRIFEGEKQTF 88
D + IFEGE+ +
Sbjct: 71 -SDTLHIFEGERLKY 84
>gi|186683672|ref|YP_001866868.1| secretion protein HlyD [Nostoc punctiforme PCC 73102]
gi|186466124|gb|ACC81925.1| secretion protein HlyD family protein [Nostoc punctiforme PCC
73102]
Length = 515
Score = 37.7 bits (86), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Query: 15 TKSVTYWAVG-SKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNALLTVNNR 73
T+S+ Y VG + ++PW + S++ E G + GR++ +Q D ++ VN +
Sbjct: 59 TRSMLYLLVGFAGIILPWAML--SKVD-ETGSARGRMEPEGATQKLDSPVTGSITAVNVK 115
Query: 74 EGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDLNNMKNRI 132
EG ++ Q + SD V DL + +L+G+ S L+ +KN+I
Sbjct: 116 EGSTVK----AGQILVQLESD--------VLRTDLQQVQTKLEGLLNRRSQLDLLKNQI 162
>gi|220930188|ref|YP_002507097.1| phage minor structural protein [Clostridium cellulolyticum H10]
gi|220000516|gb|ACL77117.1| phage minor structural protein [Clostridium cellulolyticum H10]
Length = 839
Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 11/92 (11%)
Query: 26 KFVIPWDIKDPSRIH------AEVGYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIR 79
+F +PW+ D R+H +V + R++ L + + DG L TV +
Sbjct: 423 EFKLPWN--DSKRVHLDNEKQVQVAHDIYRIRTL--TDEKGADGTGVLTTVYAEAAFYDL 478
Query: 80 IFEGEKQTFKEYNSDSPRAPHNLVKEADLYPL 111
F EKQ +E+N+D P AP + E + L
Sbjct: 479 TFSAEKQP-REFNADLPSAPMSYALEGTGWSL 509
>gi|125550885|gb|EAY96594.1| hypothetical protein OsI_18500 [Oryza sativa Indica Group]
Length = 617
Score = 34.3 bits (77), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 49 RVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADL 108
R++EL D D L L+ N ++ D +R+ E E+Q + N HN KEA L
Sbjct: 321 RLEELTAQADSDKRNLEVLMQKNAKKADHLRLAELEQQK-ADGNVLRLVEEHNREKEATL 379
Query: 109 ---YPLHNRLDGVETIVSDLNNMKNRIQ 133
LH +LD + + ++ ++K ++Q
Sbjct: 380 NSNMRLHEQLDRKQKLELEIAHLKGKLQ 407
>gi|115462155|ref|NP_001054677.1| Os05g0153200 [Oryza sativa Japonica Group]
gi|52353592|gb|AAU44158.1| putative transcription factor [Oryza sativa Japonica Group]
gi|113578228|dbj|BAF16591.1| Os05g0153200 [Oryza sativa Japonica Group]
Length = 617
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 49 RVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADL 108
R++EL D D L L+ N ++ D +R+ E E+Q + N HN KEA L
Sbjct: 321 RLEELTAQADSDKRNLEVLMQKNAKKADHLRLAELEQQK-ADGNVLRLVEEHNREKEATL 379
Query: 109 ---YPLHNRLDGVETIVSDLNNMKNRIQ 133
LH +LD + + ++ ++K ++Q
Sbjct: 380 NSNMRLHEQLDRKQKLELEIAHLKGKLQ 407
>gi|319790528|ref|YP_004152161.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase [Thermovibrio ammonificans HB-1]
gi|317115030|gb|ADU97520.1| 5-methyltetrahydropteroyltriglutamate--homocysteine
S-methyltransferase [Thermovibrio ammonificans HB-1]
Length = 720
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 21 WAVGSKFVIPWDIKDPSRIHAEVGYSD-GRVQELAISQDFDVDGLNALLTVNNREGDFIR 79
WAV S + +K ++IH + YS+ G + E + DFDV + A +GD I
Sbjct: 586 WAVRSFRLCHSSVKPETQIHTHMCYSEFGEIMEYILQMDFDVISIEA----TRSKGDIIE 641
Query: 80 IFE 82
FE
Sbjct: 642 AFE 644
>gi|115526362|ref|YP_783273.1| nitrogenase-associated protein [Rhodopseudomonas palustris BisA53]
gi|115520309|gb|ABJ08293.1| nitrogenase-associated protein [Rhodopseudomonas palustris BisA53]
Length = 145
Score = 34.3 bits (77), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 46 SDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKE 105
+ R + L I+ DVD N L T + +R F GEK + +N+ SPR + ++
Sbjct: 14 GNARQKSLLIASGHDVDTRNLLTT--PWDATMLRPFFGEKPIAQWFNASSPRIKNGELRP 71
Query: 106 ADLYP 110
A+L P
Sbjct: 72 AELKP 76
>gi|222630238|gb|EEE62370.1| hypothetical protein OsJ_17159 [Oryza sativa Japonica Group]
Length = 691
Score = 33.9 bits (76), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 49 RVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADL 108
R++EL D D L L+ N ++ D +R+ E E+Q + N HN KEA L
Sbjct: 395 RLEELTAQADSDKRNLEVLMQKNAKKADHLRLAELEQQK-ADGNVLRLVEEHNREKEATL 453
Query: 109 ---YPLHNRLDGVETIVSDLNNMKNRIQ 133
LH +LD + + ++ ++K ++Q
Sbjct: 454 NSNMRLHEQLDRKQKLELEIAHLKGKLQ 481
>gi|330843161|ref|XP_003293530.1| hypothetical protein DICPUDRAFT_51014 [Dictyostelium purpureum]
gi|325076136|gb|EGC29949.1| hypothetical protein DICPUDRAFT_51014 [Dictyostelium purpureum]
Length = 815
Score = 33.9 bits (76), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 25/116 (21%)
Query: 21 WAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRI 80
WAV S + +KD ++IH+ + YSD +I Q+ D D +LT+ N + D +
Sbjct: 677 WAVNSFLLSSTGVKDSTQIHSHMCYSDFNDIFESI-QNMDCD----VLTIENSKSDLKLL 731
Query: 81 FEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHN-RLDGVETIVSDLNNMKNRIQDL 135
+ F++Y + P LY +H+ R+ VE +MKNR++ +
Sbjct: 732 -----KAFEKYGYTNEIGP-------GLYDIHSPRIPSVE-------DMKNRVEQM 768
>gi|328767248|gb|EGF77298.1| hypothetical protein BATDEDRAFT_17771 [Batrachochytrium
dendrobatidis JAM81]
Length = 769
Score = 33.5 bits (75), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 21 WAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNALLTVNNREGD--FI 78
WAV S + +KD ++IH + YSD +IS D D D +T+ N + D +
Sbjct: 633 WAVNSFLLSSTGVKDETQIHTHMCYSDFNDIFQSIS-DLDAD----CITIENSKSDLKLL 687
Query: 79 RIFEGEKQTF----KEYNSDSPRAP 99
R FE T Y+ SPR P
Sbjct: 688 RAFEAHGYTRGIGPGLYDIHSPRVP 712
>gi|158334525|ref|YP_001515697.1| DnaJ domain-containing protein [Acaryochloris marina MBIC11017]
gi|158304766|gb|ABW26383.1| DnaJ domain protein [Acaryochloris marina MBIC11017]
Length = 717
Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Query: 33 IKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNAL-------LTVNNREGDFIRIFEGEK 85
+ +PS + G ++ ++ + FD +NA+ TV + ++FEG +
Sbjct: 625 LAEPSLSEWKAGAQSDQLNQIHLEYTFDDLKINAIKQQSPTEATVEATVTETAKVFEGGQ 684
Query: 86 QTFKEYNSDSPRAPHNLVKEADLYPL 111
QT Y D+ R + LV+E D + +
Sbjct: 685 QTTDAYTGDTYRVRYQLVREQDQWKI 710
Searching..................................................done
Results from round 2
CONVERGED!
>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
asiaticus str. psy62]
gi|307601368|gb|ACT66821.3| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 135
Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats.
Identities = 135/135 (100%), Positives = 135/135 (100%)
Query: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD
Sbjct: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
Query: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET
Sbjct: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
Query: 121 IVSDLNNMKNRIQDL 135
IVSDLNNMKNRIQDL
Sbjct: 121 IVSDLNNMKNRIQDL 135
>gi|317120667|gb|ADV02490.1| hypothetical protein SC1_gp025 [Liberibacter phage SC1]
gi|317120811|gb|ADV02632.1| hypothetical protein SC1_gp025 [Candidatus Liberibacter asiaticus]
Length = 707
Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats.
Identities = 134/135 (99%), Positives = 135/135 (100%)
Query: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD
Sbjct: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
Query: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET
Sbjct: 61 VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
Query: 121 IVSDLNNMKNRIQDL 135
IVSDLNNMKNRIQ+L
Sbjct: 121 IVSDLNNMKNRIQEL 135
>gi|315122307|ref|YP_004062796.1| hypothetical protein CKC_02795 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495709|gb|ADR52308.1| hypothetical protein CKC_02795 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 176
Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats.
Identities = 53/130 (40%), Positives = 80/130 (61%), Gaps = 1/130 (0%)
Query: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
M K NFEQ KSV+Y + S+FVIPW+I+D +IHAEV SDGR EL + DF+VD +
Sbjct: 1 MVKRNFEQDKSVSYSLLTSRFVIPWEIEDYRKIHAEVETSDGRRNELVLEDDFEVDCEDN 60
Query: 67 LLTVNNRE-GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDL 125
LT+ N + +RI++GEKQ K + ++PHNL++ DL P++ RL+ +E +
Sbjct: 61 FLTLKNTDLKGILRIYDGEKQELKYSIDPNIQSPHNLLRYGDLSPIYLRLENLEKYTDSI 120
Query: 126 NNMKNRIQDL 135
+ ++
Sbjct: 121 ETGTKNLSEV 130
>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254547867|gb|ACT66820.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 341
Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
M + NFEQ+K V+Y GS FVIPW +KDPSRIHAEV Y DG ++EL+ +DF VD +
Sbjct: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
Query: 67 LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122
L ++++ + +RIFEGEKQTFK++N + + K + L +++ ++ IV
Sbjct: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114
Query: 123 SDL 125
+DL
Sbjct: 115 NDL 117
>gi|317120708|gb|ADV02530.1| hypothetical protein SC2_gp020 [Liberibacter phage SC2]
gi|317120769|gb|ADV02590.1| hypothetical protein SC2_gp020 [Candidatus Liberibacter asiaticus]
Length = 280
Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats.
Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
M + NFEQ+K V+Y GS FVIPW +KDPSRIHAEV Y DG ++EL+ +DF VD +
Sbjct: 1 MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60
Query: 67 LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122
L ++++ + +RIFEGEKQTFK++N + + K + L +++ ++ IV
Sbjct: 61 SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114
Query: 123 SDL 125
+DL
Sbjct: 115 NDL 117
>gi|315121953|ref|YP_004062442.1| hypothetical protein CKC_01015 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122920|ref|YP_004063409.1| hypothetical protein CKC_05880 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495355|gb|ADR51954.1| hypothetical protein CKC_01015 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496322|gb|ADR52921.1| hypothetical protein CKC_05880 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 521
Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 14 QTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLN---ALLTV 70
+ S++Y S ++IPW+ DP+ +HAE + + L ++F VD LLT
Sbjct: 9 KEHSISYVCTTSYYIIPWNFDDPTTVHAEFVKGE-ESKPLEYGEEFTVDCDEGMLTLLTD 67
Query: 71 NNREGDFIRIFEGEKQTF 88
N D + IFEGE+ +
Sbjct: 68 YNN-SDTLHIFEGERLKY 84
>gi|317120750|gb|ADV02572.1| hypothetical protein SC2_gp260 [Liberibacter phage SC2]
gi|317120764|gb|ADV02585.1| hypothetical protein SC2_gp260 [Candidatus Liberibacter asiaticus]
Length = 51
Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats.
Identities = 22/25 (88%), Positives = 24/25 (96%)
Query: 111 LHNRLDGVETIVSDLNNMKNRIQDL 135
+H RLDGVETIVSDLNNMKNRIQ+L
Sbjct: 1 MHTRLDGVETIVSDLNNMKNRIQEL 25
>gi|326918662|ref|XP_003205607.1| PREDICTED: AF4/FMR2 family member 1-like [Meleagris gallopavo]
Length = 1274
Score = 38.6 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 46/117 (39%), Gaps = 21/117 (17%)
Query: 31 WDIKDPSRIHAEVGYSDGRVQEL------AISQDFDV--DGLNALLTVNNREGDFIRIFE 82
W ++ H V DG +++ + ++ DG L+ + N + + +RI E
Sbjct: 28 WHLQAKRASHMTVLTGDGTFEDINSDKSVVPGEIMEIPPDGCQNLIGLYNEDRNLLRIQE 87
Query: 83 ---------GEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDLNNMKN 130
EK F E N+ P+ KE +L +R+ + DL ++ N
Sbjct: 88 RQRRNQEALQEKDKFPE-NTPLFPEPYKTNKEDELS---SRIQNMLGNYDDLQDLIN 140
>gi|119947048|ref|YP_944728.1| DNA-directed RNA polymerase, beta' subunit [Psychromonas ingrahamii
37]
gi|212288488|sp|A1T064|RPOC_PSYIN RecName: Full=DNA-directed RNA polymerase subunit beta'; Short=RNAP
subunit beta'; AltName: Full=RNA polymerase subunit
beta'; AltName: Full=Transcriptase subunit beta'
gi|119865652|gb|ABM05129.1| DNA-directed RNA polymerase, beta' subunit [Psychromonas ingrahamii
37]
Length = 1406
Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 78 IRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDG 117
+ IFEGEK E SD P +PH++++ + P+ N +
Sbjct: 1196 LNIFEGEKIEKGEVISDGPESPHDILRLRGISPVANYITN 1235
>gi|90407964|ref|ZP_01216137.1| DNA-directed RNA polymerase beta' subunit [Psychromonas sp. CNPT3]
gi|90310902|gb|EAS39014.1| DNA-directed RNA polymerase beta' subunit [Psychromonas sp. CNPT3]
Length = 1406
Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 78 IRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDG 117
+ IFEGEK E SD P +PH++++ + P+ N +
Sbjct: 1196 LNIFEGEKIEKGEVVSDGPESPHDILRLRGISPVANYITN 1235
>gi|193216048|ref|YP_001997247.1| carboxyl-terminal protease [Chloroherpeton thalassium ATCC 35110]
gi|193089525|gb|ACF14800.1| carboxyl-terminal protease [Chloroherpeton thalassium ATCC 35110]
Length = 555
Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 45/130 (34%), Gaps = 11/130 (8%)
Query: 7 MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYS-DGRVQELAISQDFDVDGLN 65
+ + FE + S++ P +I + +GR + ++ +
Sbjct: 320 LVQRQFEFSDGSAMRVTVSRYYTPLG----RQIQRQFSTGAEGRRD--YYLEAYNRKAAD 373
Query: 66 ALLTVNNREGDFI----RIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETI 121
ALL N D + R+ E K + + P V + + + V+T+
Sbjct: 374 ALLLDKNINMDSLWIHERVIETAKYIMPDSLHPVFKTPSGRVVLGGGGIMPDYMVKVDTV 433
Query: 122 VSDLNNMKNR 131
N++N+
Sbjct: 434 TKYFRNLRNK 443
>gi|123976814|ref|XP_001330617.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897222|gb|EAY02350.1| hypothetical protein TVAG_054480 [Trichomonas vaginalis G3]
Length = 686
Score = 35.9 bits (81), Expect = 1.9, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 1 MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
M R++ + L + TKSV + G F+ ++ D + + + V+ L IS+DFD
Sbjct: 450 MNRQIQISSLFVDITKSVFFVGNGLGFLRIVNLNDFTFVGKIFRPHEDTVKWLDISEDFD 509
Query: 61 V---DGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADL 108
V G + + V + E + F G T K +N ++ + + DL
Sbjct: 510 VVVSSGYDNEIVVYHTEKEC---FVGRLGTAKYWNIENISTWIKIQQAPDL 557
>gi|227888772|ref|ZP_04006577.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200]
gi|227850609|gb|EEJ60695.1| transcriptional regulator [Lactobacillus johnsonii ATCC 33200]
Length = 284
Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 43 VGYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNL 102
YS+ ++ D+D +L + + D I+ FE ++K + R N+
Sbjct: 30 FHYSEIETGYAKNGKEADIDSEKLILLLKSNHVDIIKFFESVNGSYK--IDERARMIENI 87
Query: 103 VKEADLYPLHNRLDGVETIVSDLNNM 128
+ + +N L+ VE I +L NM
Sbjct: 88 SNQLSVAFNNNDLEKVEKITHELENM 113
>gi|331269010|ref|YP_004395502.1| V-type sodium ATP synthase subunit I [Clostridium botulinum
BKT015925]
gi|329125560|gb|AEB75505.1| V-type sodium ATP synthase subunit I [Clostridium botulinum
BKT015925]
Length = 654
Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 43 VGYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQ-TFKEYNSDSPRAPHN 101
+ SD + EL L+ L ++G F + EG+K TFKE N
Sbjct: 50 LVTSDKDILELESELSKIKFCLDYLKPYFEKKGAFSVLKEGKKTITFKEL--------EN 101
Query: 102 LVKEADLYPLHNRLDGVETIVSDLNNMKNRIQ 133
+ KE D ++ L E +++LNN K +IQ
Sbjct: 102 IAKEVDWNIIYQELKLRENRINNLNNEKTKIQ 133
>gi|42518515|ref|NP_964445.1| hypothetical protein LJ0420 [Lactobacillus johnsonii NCC 533]
gi|41582800|gb|AAS08411.1| hypothetical protein LJ_0420 [Lactobacillus johnsonii NCC 533]
gi|329666786|gb|AEB92734.1| hypothetical protein LJP_0400 [Lactobacillus johnsonii DPC 6026]
Length = 273
Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 11/100 (11%)
Query: 29 IPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTF 88
IP + S I E GY+ ++ D+D +L + + D IR FE ++
Sbjct: 14 IPMSVSHYSEI--ETGYAKN-------GKEADIDSEKLILLLKSNHVDIIRFFESVNGSY 64
Query: 89 KEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDLNNM 128
K + R ++ + + +N L+ VE I +L NM
Sbjct: 65 K--IDERARMIEDISNQLSIAFNNNDLERVEKITHELENM 102
>gi|422418|pir||S34639 pol protein - fruit fly (Drosophila ananassae) transposon Tom
(fragment)
gi|394705|emb|CAA80824.1| pol protein [Drosophila ananassae]
Length = 1040
Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 16/94 (17%)
Query: 42 EVGYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHN 101
++ +S R+ L + + + L ++ FEGE+ TF HN
Sbjct: 113 KIDFSPFRLDHLNPEETYKLKHLLNKFKD-------LQYFEGERLTFTNTIKHVLNTTHN 165
Query: 102 LVKEADLYPLHNRLDGVETIVSDLNNMKNRIQDL 135
+ YPL + N ++N++Q++
Sbjct: 166 SPIYSKQYPLAQTHE---------NEVENQVQEM 190
>gi|332520629|ref|ZP_08397091.1| GumN family protein [Lacinutrix algicola 5H-3-7-4]
gi|332043982|gb|EGI80177.1| GumN family protein [Lacinutrix algicola 5H-3-7-4]
Length = 1176
Score = 33.6 bits (75), Expect = 9.5, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 52/125 (41%), Gaps = 13/125 (10%)
Query: 16 KSVTYWAVGSKF-VIPWDIKDPSRIHAEVGYSDGRVQELAISQDF---------DVDGLN 65
+ Y F IP I+D + + + R Q L++S ++ L
Sbjct: 900 EDYNYAIFSPYFDSIPMAIEDYNGLLKLIDSKKYRSQLLSLSAQILKSSYKNKSNIIPLF 959
Query: 66 ALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIVSDL 125
LT+NN + ++ F +K + K++N +N + + +P + + ++ + L
Sbjct: 960 NSLTINNTKD--LKTFINQKAS-KDFNYSHQTIIYNYLNYFEAFPKNKQAQTIDNFTNQL 1016
Query: 126 NNMKN 130
++KN
Sbjct: 1017 LDIKN 1021
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.305 0.129 0.337
Lambda K H
0.267 0.0398 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,083,340,904
Number of Sequences: 14124377
Number of extensions: 69606800
Number of successful extensions: 207496
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 207455
Number of HSP's gapped (non-prelim): 61
length of query: 135
length of database: 4,842,793,630
effective HSP length: 100
effective length of query: 35
effective length of database: 3,430,355,930
effective search space: 120062457550
effective search space used: 120062457550
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.0 bits)
S2: 75 (33.5 bits)