RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|255764517|ref|YP_003084345.1| hypothetical protein
CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)



>gnl|CDD|177771 PLN00176, PLN00176, galactinol synthase.
          Length = 333

 Score = 28.1 bits (63), Expect = 0.74
 Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)

Query: 8   EKLNFEQTKSVTYWAVGSKFVIPW 31
           E +  ++ K V Y A GSK   PW
Sbjct: 246 ENVELDKVKVVHYCAAGSK---PW 266


>gnl|CDD|162722 TIGR02136, ptsS_2, phosphate binding protein.  Members of this
           family are phosphate-binding proteins. Most are found in
           phosphate ABC-transporter operons, but some are found in
           phosphate regulatory operons. This model separates
           members of the current family from the phosphate ABC
           transporter phosphate binding protein described by
           TIGRFAMs model TIGR00975.
          Length = 287

 Score = 26.2 bits (58), Expect = 2.8
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 80  IFEGEKQTFKEYNSDSPRAPHNLV 103
           I+ GE   +KE   D P  P  +V
Sbjct: 141 IYSGEITNWKEVGGDLPNKPIVVV 164


>gnl|CDD|116802 pfam08216, DUF1716, Eukaryotic domain of unknown function
           (DUF1716).  This domain is found in eukaryotic proteins.
           A human nuclear protein with this domain is thought to
           have a role in apoptosis.
          Length = 108

 Score = 25.0 bits (55), Expect = 6.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 100 HNLVKEADLYPLHNRLDGVETIVSDLNNMKNRI 132
             L    DLYP    L+GV +++S LN+    I
Sbjct: 71  KVLATCPDLYPSLVELNGVSSLLSLLNHENTDI 103


>gnl|CDD|117843 pfam09299, Mu-transpos_C, Mu transposase, C-terminal.  Members of
          this family are found in various prokaryotic integrases
          and transposases. They adopt a beta-barrel structure
          with Greek-key topology.
          Length = 63

 Score = 24.8 bits (55), Expect = 6.7
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 11/54 (20%)

Query: 2  IRKVNMEKLNFEQTKSVTYWA------VGSKFVIPWDIKDPSRIHAEVGYSDGR 49
           RKV+   +         Y A      VG K ++ +D +D SR+   V   DGR
Sbjct: 10 ERKVDRGGIRLF---GNRYEAPALAAYVGEKVIVRYDPRDLSRVL--VYAKDGR 58


>gnl|CDD|185395 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
          Length = 653

 Score = 24.8 bits (54), Expect = 8.4
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 71  NNREGDFIRIFEGEKQTFKEYN 92
           +N+ G  I++FEGE+   K+ N
Sbjct: 435 DNQPGVLIQVFEGERAMTKDNN 456


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,143,000
Number of extensions: 123746
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 11
Length of query: 135
Length of database: 5,994,473
Length adjustment: 83
Effective length of query: 52
Effective length of database: 4,201,009
Effective search space: 218452468
Effective search space used: 218452468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)