BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|255764517|ref|YP_003084345.1| hypothetical protein
CLIBASIA_05538 [Candidatus Liberibacter asiaticus str. psy62]
         (135 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|255764517|ref|YP_003084345.1| hypothetical protein CLIBASIA_05538 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score =  280 bits (716), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 135/135 (100%), Positives = 135/135 (100%)

Query: 1   MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60
           MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD
Sbjct: 1   MIRKVNMEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFD 60

Query: 61  VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120
           VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET
Sbjct: 61  VDGLNALLTVNNREGDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVET 120

Query: 121 IVSDLNNMKNRIQDL 135
           IVSDLNNMKNRIQDL
Sbjct: 121 IVSDLNNMKNRIQDL 135


>gi|255764516|ref|YP_003084344.1| hypothetical protein CLIBASIA_05532 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 96.3 bits (238), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/123 (43%), Positives = 79/123 (64%), Gaps = 10/123 (8%)

Query: 7   MEKLNFEQTKSVTYWAVGSKFVIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDGLNA 66
           M + NFEQ+K V+Y   GS FVIPW +KDPSRIHAEV Y DG ++EL+  +DF VD   +
Sbjct: 1   MMQYNFEQSKDVSYRLFGSYFVIPWTVKDPSRIHAEVKYPDGNMEELSPERDFKVDVDES 60

Query: 67  LLTVNNRE----GDFIRIFEGEKQTFKEYNSDSPRAPHNLVKEADLYPLHNRLDGVETIV 122
            L ++++      + +RIFEGEKQTFK++N +  +      K   +  L  +++ ++ IV
Sbjct: 61  SLILSSKRWINNNNALRIFEGEKQTFKDFNIEVQK------KVNQVNVLTQKMNTIDGIV 114

Query: 123 SDL 125
           +DL
Sbjct: 115 NDL 117


>gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase (methyltransferase) protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 264

 Score = 26.6 bits (57), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 44  GYSDGRVQELAISQDFDVDGLNALLTVNNREGDFIRIFEGEK----QTFKEYNSD 94
           G S  R     +S+  + DGL ++    N++ D +RIFE  K      FK+Y  +
Sbjct: 202 GLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFKDYGGN 256


>gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 750

 Score = 23.9 bits (50), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 28  VIPWDIKDPSRIHAEVGYSDGRVQELAISQDFDVDG 63
           +   D+KDP        Y D R +E+  S +FD+ G
Sbjct: 549 IFKSDLKDPKSFAN--TYKDNRYKEIISSFNFDIHG 582


>gi|254780701|ref|YP_003065114.1| putative two-component sensor histidine kinase transcriptional
           regulatory protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 495

 Score = 23.9 bits (50), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 38  RIHAEVGYSDGRVQELAI 55
           R+H  VG++ GR Q ++I
Sbjct: 388 RVHVTVGWTSGRGQYISI 405


>gi|254780462|ref|YP_003064875.1| enoyl-(acyl carrier protein) reductase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 267

 Score = 22.3 bits (46), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 13/17 (76%)

Query: 23 VGSKFVIPWDIKDPSRI 39
          V S F+IP +++DPS +
Sbjct: 56 VDSDFMIPCNVEDPSSM 72


>gi|254781115|ref|YP_003065528.1| poly(A) polymerase protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 416

 Score = 22.3 bits (46), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 46  SDGRVQELAISQDFDVDGLNALLTVNNREGD 76
           +DGR  ++  ++D+  D L    T+N    D
Sbjct: 100 TDGRYAKVVFTRDWKADSLRRDFTINALYAD 130


>gi|254780817|ref|YP_003065230.1| preprotein translocase subunit SecB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 152

 Score = 21.6 bits (44), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 86  QTFKEYNSDSPRAPH 100
           Q  K+++ +SP APH
Sbjct: 14  QYIKDFSFESPNAPH 28


>gi|254780552|ref|YP_003064965.1| Holliday junction DNA helicase RuvB [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 334

 Score = 20.8 bits (42), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 14/19 (73%)

Query: 117 GVETIVSDLNNMKNRIQDL 135
           G+ETI + L+  ++ I+DL
Sbjct: 281 GIETISAGLSEPRDAIEDL 299


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.135    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,732
Number of Sequences: 1233
Number of extensions: 3193
Number of successful extensions: 12
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 10
length of query: 135
length of database: 328,796
effective HSP length: 65
effective length of query: 70
effective length of database: 248,651
effective search space: 17405570
effective search space used: 17405570
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 34 (17.7 bits)