Query 537021.9.peg.1044_1 Match_columns 42 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Fri May 20 16:20:09 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1044.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bg1_B Nucleoporin NUP145; NP 19.5 38 0.0011 17.0 0.8 19 20-38 3-21 (126) 2 >2rft_A Influenza B hemaggluti 18.9 44 0.0013 16.6 1.0 10 6-15 31-40 (54) 3 >3jro_A Fusion protein of prot 17.3 42 0.0012 16.7 0.6 19 20-38 2-20 (134) 4 >1s5j_A DNA polymerase I; repl 11.8 98 0.0029 15.1 1.2 18 8-26 1-18 (67) 5 >2q07_A Uncharacterized protei 6.7 1.1E+02 0.0033 14.8 -0.1 20 1-20 32-51 (164) 6 >3k8p_C DSL1, KLLA0C02695P; in 6.2 2.5E+02 0.0075 13.2 1.5 15 21-37 52-66 (96) 7 >1fmh_A General control protei 5.9 2.1E+02 0.0062 13.6 0.9 14 23-36 14-27 (33) 8 >2k8q_A Protein SHQ1; beta-san 5.1 2E+02 0.0058 13.7 0.4 10 8-17 43-52 (134) 9 >3ft1_A PHL P 3 allergen; beta 4.8 2.5E+02 0.0073 13.2 0.7 8 8-15 11-18 (100) 10 >3kvw_A DYRK2, dual specificit 3.6 3.8E+02 0.011 12.4 0.8 13 24-36 5-17 (77) No 1 >>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B (B:112-165,B:262-333) Probab=19.48 E-value=38 Score=16.97 Aligned_cols=19 Identities=47% Similarity=0.689 Sum_probs=16.1 Q ss_pred HHHHHCCCCHHHHHHHHHH Q ss_conf 2133102118999998876 Q 537021.9.peg.1 20 LEKISENYQLSKIVSLLFF 38 (42) Q Consensus 20 lekisenyqlskivsllff 38 (42) .|++++.|++-|..|+||= T Consensus 3 ~~p~~~~y~iWKL~SILFD 21 (126) T 3bg1_B 3 MEKTSSDYNLWKLSSILFD 21 (126) T ss_dssp SCTTSHHHHHHHHHHHHTS T ss_pred CCCCCHHHHHHHHHHHHCC T ss_conf 0467548889999998448 No 2 >>2rft_A Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope protein, fusion protein, membrane, transmembrane, virion; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} PDB: 2rfu_A* 3bt6_A* (A:32-46,A:285-323) Probab=18.92 E-value=44 Score=16.64 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=7.7 Q ss_pred CCCCCCEEEE Q ss_conf 7898746865 Q 537021.9.peg.1 6 SNGSKPYYLS 15 (42) Q Consensus 6 sngskpyyls 15 (42) -|.|||||-. T Consensus 31 lnkskpyytg 40 (54) T 2rft_A 31 LNKSKPYYTG 40 (54) T ss_dssp ECCCSSEECS T ss_pred CCCCCCCCCC T ss_conf 6688874315 No 3 >>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, ER-golgi transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} (A:422-482,A:571-643) Probab=17.26 E-value=42 Score=16.74 Aligned_cols=19 Identities=47% Similarity=0.640 Sum_probs=16.1 Q ss_pred HHHHHCCCCHHHHHHHHHH Q ss_conf 2133102118999998876 Q 537021.9.peg.1 20 LEKISENYQLSKIVSLLFF 38 (42) Q Consensus 20 lekisenyqlskivsllff 38 (42) .||-|+.|++-|..|+||= T Consensus 2 ~~~t~~ey~IWKL~SILFD 20 (134) T 3jro_A 2 XEKTSSDYNLWKLSSILFD 20 (134) T ss_dssp SCSSSHHHHHHHHHHHHTS T ss_pred HCCCCHHHHHHHHHHHHCC T ss_conf 1555356789988776256 No 4 >>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} (A:50-116) Probab=11.76 E-value=98 Score=15.06 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=10.5 Q ss_pred CCCCEEEECCEEHHHHHCC Q ss_conf 9874686501012133102 Q 537021.9.peg.1 8 GSKPYYLSTSYELEKISEN 26 (42) Q Consensus 8 gskpyylstsyelekisen 26 (42) |-|||.+..- .-|+|.++ T Consensus 1 GHKPY~lt~~-~Peei~~~ 18 (67) T 1s5j_A 1 GHKPYFLVDL-EPDKVGKI 18 (67) T ss_dssp CCCCEEEESS-CHHHHTTC T ss_pred CCCCEEEEEC-CHHHHHHH T ss_conf 9875399988-77887899 No 5 >>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} (A:1-164) Probab=6.71 E-value=1.1e+02 Score=14.81 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=13.0 Q ss_pred CEEEECCCCCCEEEECCEEH Q ss_conf 68870789874686501012 Q 537021.9.peg.1 1 LILLNSNGSKPYYLSTSYEL 20 (42) Q Consensus 1 lillnsngskpyylstsyel 20 (42) ++++.....|||+.|.|+.. T Consensus 32 lvl~pcs~~KPYs~S~s~~~ 51 (164) T 2q07_A 32 VLLLPCTARKPYLTSRTHRA 51 (164) T ss_dssp EEEEECCSSSSGGGSHHHHH T ss_pred EEEECCCCCCCCCCCHHHHH T ss_conf 99943789998522876999 No 6 >>3k8p_C DSL1, KLLA0C02695P; intracellular trafficking, DSL1 complex, multisubunit tethering complex, snare proteins; 2.60A {Kluyveromyces lactis} (C:210-305) Probab=6.19 E-value=2.5e+02 Score=13.17 Aligned_cols=15 Identities=60% Similarity=0.802 Sum_probs=9.9 Q ss_pred HHHHCCCCHHHHHHHHH Q ss_conf 13310211899999887 Q 537021.9.peg.1 21 EKISENYQLSKIVSLLF 37 (42) Q Consensus 21 ekisenyqlskivsllf 37 (42) ||-||| ||..+|++. T Consensus 52 EKNSEN--LsEli~li~ 66 (96) T 3k8p_C 52 EKSSEN--LSEFIXLLL 66 (96) T ss_dssp HHHHHH--HHHHHHHHH T ss_pred HHHHHH--HHHHHHHHC T ss_conf 899999--999999875 No 7 >>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} (A:) Probab=5.87 E-value=2.1e+02 Score=13.56 Aligned_cols=14 Identities=50% Similarity=0.624 Sum_probs=10.5 Q ss_pred HHCCCCHHHHHHHH Q ss_conf 31021189999988 Q 537021.9.peg.1 23 ISENYQLSKIVSLL 36 (42) Q Consensus 23 isenyqlskivsll 36 (42) -.|||||..-|.-| T Consensus 14 eaenyqleqevaql 27 (33) T 1fmh_A 14 EAENYQLEQEVAQL 27 (33) T ss_dssp HHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHH T ss_conf 99886899999999 No 8 >>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae} (A:) Probab=5.13 E-value=2e+02 Score=13.68 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=6.8 Q ss_pred CCCCEEEECC Q ss_conf 9874686501 Q 537021.9.peg.1 8 GSKPYYLSTS 17 (42) Q Consensus 8 gskpyylsts 17 (42) -++||||.-. T Consensus 43 ~~~PYyLRL~ 52 (134) T 2k8q_A 43 HLSPYYLRLR 52 (134) T ss_dssp CSSSSCEEEC T ss_pred ECCCCEEEEE T ss_conf 6266068980 No 9 >>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} (A:) Probab=4.84 E-value=2.5e+02 Score=13.23 Aligned_cols=8 Identities=50% Similarity=0.655 Sum_probs=0.0 Q ss_pred CCCCEEEE Q ss_conf 98746865 Q 537021.9.peg.1 8 GSKPYYLS 15 (42) Q Consensus 8 gskpyyls 15 (42) ||.|||++ T Consensus 11 gSnp~~~a 18 (100) T 3ft1_A 11 GSDPKKLV 18 (100) T ss_dssp TCBTTEEE T ss_pred CCCCCEEE T ss_conf 99966799 No 10 >>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation- regulated kinase 2; KI-(Y)-phosphorylation regulated kinase 2, PSK-H2; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* (A:299-375) Probab=3.60 E-value=3.8e+02 Score=12.37 Aligned_cols=13 Identities=38% Similarity=0.526 Sum_probs=0.0 Q ss_pred HCCCCHHHHHHHH Q ss_conf 1021189999988 Q 537021.9.peg.1 24 SENYQLSKIVSLL 36 (42) Q Consensus 24 senyqlskivsll 36 (42) +|--||.+|+.+| T Consensus 5 ~e~DQl~~IievL 17 (77) T 3kvw_A 5 DEGDQLACMIELL 17 (77) T ss_dssp SHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHH T ss_conf 9799999999974 Done!