Query 537021.9.peg.1064_1 Match_columns 238 No_of_seqs 20 out of 22 Neff 3.3 Searched_HMMs 23785 Date Wed May 25 05:06:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1064.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2ksn_A Ubiquitin domain-contai 45.4 13 0.00054 15.9 2.8 41 25-73 73-113 (137) 2 2h12_A Citrate synthase; acido 21.1 23 0.00098 14.3 0.8 20 54-73 12-31 (436) 3 2v51_E MKL/myocardin-like prot 17.6 41 0.0017 12.8 1.4 12 174-185 18-29 (32) 4 2gcx_A FEOA, ferrous iron tran 16.9 37 0.0016 13.0 1.0 17 171-187 20-36 (75) 5 3i0u_A Phosphothreonine lyase 16.1 44 0.0019 12.5 2.0 43 140-186 131-173 (218) 6 1p71_A DNA-binding protein HU; 15.2 47 0.002 12.4 3.0 32 38-69 43-74 (94) 7 1exe_A Transcription factor 1; 13.9 48 0.002 12.3 0.9 32 38-69 43-74 (99) 8 3e19_A FEOA; transcriptional r 13.8 51 0.0021 12.1 1.3 17 171-187 25-41 (77) 9 3bo6_A Hydrophilic protein, VI 13.8 51 0.0022 12.1 2.0 40 143-186 136-175 (220) 10 2p1w_A 27.5 kDa virulence prot 13.3 53 0.0022 12.1 2.0 19 168-186 187-205 (250) No 1 >2ksn_A Ubiquitin domain-containing protein 2; UBTD2, DC-UBP, signaling protein; NMR {Homo sapiens} Probab=45.39 E-value=13 Score=15.92 Aligned_cols=41 Identities=20% Similarity=0.277 Sum_probs=31.2 Q ss_pred HHHHHHHHHCCCCCCCCCCCEEEEECCCCEEECCCCCCEEECCCCCCCC Q ss_conf 8899877735677658865136886598403256677322135421012 Q 537021.9.peg.1 25 ANASANAYRENIDRMTPDGIWQYKTSGVDKIIDSFIGREISIPHYLQSY 73 (238) Q Consensus 25 ~TA~an~~lnnvNq~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~tatq 73 (238) +-..|++.+.-.+..-|.|+|+-. +|- .|..|+||.|.... T Consensus 73 D~~tAQ~IldaAgItvp~gdL~~c-------YDe-~G~~Y~LP~~vls~ 113 (137) T 2ksn_A 73 DHELAQAIIDGANITLPHGALTEC-------YDE-LGNRYQLPVYCLAP 113 (137) T ss_dssp CHHHHHHHHHHHSCBCSSCCSSEE-------EET-TTEEEECCGGGTCC T ss_pred CHHHHHHHHHHCCCEECCCCHHHH-------HHC-CCCCCCCCEEEEEC T ss_conf 999999999863976367508999-------876-69844688426508 No 2 >2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery, transferase; HET: CMX; 1.85A {Acetobacter aceti} Probab=21.11 E-value=23 Score=14.28 Aligned_cols=20 Identities=15% Similarity=0.149 Sum_probs=10.1 Q ss_pred EEECCCCCCEEECCCCCCCC Q ss_conf 03256677322135421012 Q 537021.9.peg.1 54 KIIDSFIGREISIPHYLQSY 73 (238) Q Consensus 54 ~~~Dp~tGk~y~~P~~tatq 73 (238) +.|+..+||+|++|+...+. T Consensus 12 ~~~~~~~g~~~~~pi~~~~~ 31 (436) T 2h12_A 12 TATISVDGKSAEMPVLSGTL 31 (436) T ss_dssp EEEEEETTEEEEEEEECCSB T ss_pred EEEEEECCEEEEEEEEECCC T ss_conf 69997799799954554788 No 3 >2v51_E MKL/myocardin-like protein 1; structural protein/contractIle protein, contractIle protein, structural protein, nucleotide-binding; HET: ATP LAB; 2.35A {Mus musculus} Probab=17.58 E-value=41 Score=12.75 Aligned_cols=12 Identities=25% Similarity=0.470 Sum_probs=9.1 Q ss_pred HHHHHHHCCCCC Q ss_conf 999876067657 Q 537021.9.peg.1 174 ETKLHNQGLVSG 185 (238) Q Consensus 174 etrLaNQGl~~G 185 (238) +.+|+.|||+|- T Consensus 18 re~l~~qgimpp 29 (32) T 2v51_E 18 REELVSQGIMPP 29 (32) T ss_dssp HHHHHHTTSSCC T ss_pred HHHHHHCCCCCC T ss_conf 999987457887 No 4 >2gcx_A FEOA, ferrous iron transport protein A; NMR {Klebsiella pneumoniae} SCOP: b.34.1.2 Probab=16.90 E-value=37 Score=13.03 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=12.4 Q ss_pred HHHHHHHHHHCCCCCHH Q ss_conf 99999987606765758 Q 537021.9.peg.1 171 EDLETKLHNQGLVSGSV 187 (238) Q Consensus 171 ~aLetrLaNQGl~~GS~ 187 (238) .++..||..-||.||++ T Consensus 20 ~~~~~RL~~lGl~pG~~ 36 (75) T 2gcx_A 20 PAYRQKLLSLGMLPGSS 36 (75) T ss_dssp HHHHHHHTTTTCCSSEE T ss_pred HHHHHHHHHCCCCCCCE T ss_conf 99999999849999989 No 5 >3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, plasmid, secreted, virulence, structural genomics; 2.70A {Shigella flexneri} Probab=16.14 E-value=44 Score=12.53 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=27.3 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 03331100234677999999862079875799999998760676575 Q 537021.9.peg.1 140 KEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQGLVSGS 186 (238) Q Consensus 140 g~i~~~y~~~~~q~~~~al~~rl~pq~~~~r~aLetrLaNQGl~~GS 186 (238) .=.+|-+++.....|-...|-- +..=-+.||.+|.-.||.||. T Consensus 131 QfTLY~kpd~~ds~Ysa~~l~k----~r~fi~~lE~~L~~aGi~pg~ 173 (218) T 3i0u_A 131 QFTLYVKSDQECSQYSALLLHK----IRQFIMCLESNLLRSKIAPGE 173 (218) T ss_dssp CEEEEEECCSSTTCCCHHHHHH----HHHHHHHHHHHHHHTTCCBCC T ss_pred EEEEEECCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHCCCCCCC T ss_conf 4899856875556457999987----999999999999973788898 No 6 >1p71_A DNA-binding protein HU; protein-DNA complex, DNA bending, DNA binding protein/DNA complex; 1.90A {Anabaena SP} SCOP: a.55.1.1 PDB: 1p51_A 1p78_A Probab=15.22 E-value=47 Score=12.39 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=26.6 Q ss_pred CCCCCCCEEEEECCCCEEECCCCCCEEECCCC Q ss_conf 65886513688659840325667732213542 Q 537021.9.peg.1 38 RMTPDGIWQYKTSGVDKIIDSFIGREISIPHY 69 (238) Q Consensus 38 q~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~ 69 (238) ....+|.+.-+...--.-++|-||.++.||-. T Consensus 43 ~l~gfG~F~~~~~~~r~~rNP~Tge~i~ip~k 74 (94) T 1p71_A 43 TLVGFGSFESRERKAREGRNPKTNEKMEIPAT 74 (94) T ss_dssp EETTTEEEEEEEECCEEEECTTTCCEEEECCE T ss_pred EECCEEEEEEEEECCEEEECCCCCCEEEECCC T ss_conf 71371699999845802048699988986487 No 7 >1exe_A Transcription factor 1; beta ribbon ARMS, DNA-binding, DNA-bending protein; NMR {Bacillus phage SPO1} SCOP: a.55.1.1 PDB: 1wtu_A Probab=13.91 E-value=48 Score=12.33 Aligned_cols=32 Identities=9% Similarity=-0.097 Sum_probs=25.0 Q ss_pred CCCCCCCEEEEECCCCEEECCCCCCEEECCCC Q ss_conf 65886513688659840325667732213542 Q 537021.9.peg.1 38 RMTPDGIWQYKTSGVDKIIDSFIGREISIPHY 69 (238) Q Consensus 38 q~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~ 69 (238) ...-+|++.-+...--.-.+|-||..|.||-. T Consensus 43 ~l~gfGtF~~~~r~~r~grNP~Tge~i~ip~k 74 (99) T 1exe_A 43 QLTGFLNIKPVARQARKGFNPQTQEALEIAPS 74 (99) T ss_dssp CBTTTBCCCCCCCCCCCCCCSSSSSCCCCCCC T ss_pred EECCEEEEEEEEECCCCCCCCCCCCEEEECCC T ss_conf 52243799998755811358399988986586 No 8 >3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- barrel, transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens} Probab=13.80 E-value=51 Score=12.14 Aligned_cols=17 Identities=29% Similarity=0.503 Sum_probs=12.7 Q ss_pred HHHHHHHHHHCCCCCHH Q ss_conf 99999987606765758 Q 537021.9.peg.1 171 EDLETKLHNQGLVSGSV 187 (238) Q Consensus 171 ~aLetrLaNQGl~~GS~ 187 (238) ..+..||..-||.||++ T Consensus 25 ~~~~~rL~~lGi~~G~~ 41 (77) T 3e19_A 25 HNARQKLVSMGLTPGAT 41 (77) T ss_dssp HHHHHHHHTTTCSTTCE T ss_pred HHHHHHHHHCCCCCCCE T ss_conf 89999999879999989 No 9 >3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A* Probab=13.75 E-value=51 Score=12.14 Aligned_cols=40 Identities=35% Similarity=0.502 Sum_probs=23.2 Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH Q ss_conf 31100234677999999862079875799999998760676575 Q 537021.9.peg.1 143 LYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQGLVSGS 186 (238) Q Consensus 143 ~~~y~~~~~q~~~~al~~rl~pq~~~~r~aLetrLaNQGl~~GS 186 (238) +|--++..-+.|-...|.- +..=-+.||.+|.-.||.||. T Consensus 136 LY~KPd~~ds~Ys~~~l~k----~r~fi~~lE~~L~~aGi~pg~ 175 (220) T 3bo6_A 136 LYVKPDQENSQYSASSLHN----TRQFIECLESRLSESGLMPGQ 175 (220) T ss_dssp EECCCSSTTSCCCHHHHHH----HHHHHHHHHHHHHHTTCCBCC T ss_pred EEECCCCCCCCCCHHHHHH----HHHHHHHHHHHHHHCCCCCCC T ss_conf 9856874457689899988----999999999999973788898 No 10 >2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis} Probab=13.31 E-value=53 Score=12.06 Aligned_cols=19 Identities=42% Similarity=0.595 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHCCCCCH Q ss_conf 5799999998760676575 Q 537021.9.peg.1 168 QDREDLETKLHNQGLVSGS 186 (238) Q Consensus 168 ~~r~aLetrLaNQGl~~GS 186 (238) .=-+.||.+|.-.||.||- T Consensus 187 ~fi~~lE~~L~~aGi~pg~ 205 (250) T 2p1w_A 187 QFIECLESRLSENGVISGQ 205 (250) T ss_dssp HHHHHHHHHHHHTTCCBCC T ss_pred HHHHHHHHHHHHCCCCCCC T ss_conf 9999999999972788898 Done!