Query 537021.9.peg.1064_1 Match_columns 238 No_of_seqs 20 out of 22 Neff 3.3 Searched_HMMs 13730 Date Wed May 25 05:09:59 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1064.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1z1ba1 d.10.1.4 (A:11-59) lam 37.0 8 0.00058 15.7 1.9 24 44-68 5-29 (49) 2 d1zaka2 g.41.2.1 (A:128-158) M 19.6 19 0.0014 13.4 1.3 15 54-68 2-16 (31) 3 d1mula_ a.55.1.1 (A:) HU prote 18.7 21 0.0015 13.1 1.3 32 38-69 43-74 (90) 4 d1gp0a_ b.64.1.1 (A:) Cation-i 17.7 23 0.0017 12.8 1.5 16 54-69 3-18 (133) 5 d2gcxa1 b.34.1.2 (A:1-75) Ferr 17.1 21 0.0015 13.1 1.0 16 172-187 21-36 (75) 6 d1p71a_ a.55.1.1 (A:) HU prote 16.0 26 0.0019 12.5 2.7 32 38-69 43-74 (94) 7 d1huua_ a.55.1.1 (A:) HU prote 13.7 30 0.0022 12.1 1.2 45 26-70 30-75 (90) 8 d2o97b1 a.55.1.1 (B:1-90) HU p 13.1 31 0.0023 12.0 1.0 31 39-69 44-74 (90) 9 d1exea_ a.55.1.1 (A:) Transcri 13.0 30 0.0022 12.1 0.9 32 38-69 43-74 (99) 10 d1owfa_ a.55.1.1 (A:) Integrat 12.6 32 0.0023 11.9 2.8 31 39-69 45-75 (96) No 1 >d1z1ba1 d.10.1.4 (A:11-59) lambda integrase N-terminal domain {Bacteriophage lambda [TaxId: 10710]} Probab=36.99 E-value=8 Score=15.72 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=16.6 Q ss_pred CEEEEE-CCCCEEECCCCCCEEECCC Q ss_conf 136886-5984032566773221354 Q 537021.9.peg.1 44 IWQYKT-SGVDKIIDSFIGREISIPH 68 (238) Q Consensus 44 sltYsq-~g~~~~~Dp~tGk~y~~P~ 68 (238) +| |.. .+.=.|.+|.|||+|.+-. T Consensus 5 NL-Y~k~~~y~~yr~P~tGk~~~LG~ 29 (49) T d1z1ba1 5 NL-YIRNNGYYCYRDPRTGKEFGLGR 29 (49) T ss_dssp TE-EEETTTEEEEECTTTCCEEEEES T ss_pred CC-EECCCCEEEEECCCCCCEECCCC T ss_conf 41-02368768852689886312773 No 2 >d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]} Probab=19.58 E-value=19 Score=13.37 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=11.2 Q ss_pred EEECCCCCCEEECCC Q ss_conf 032566773221354 Q 537021.9.peg.1 54 KIIDSFIGREISIPH 68 (238) Q Consensus 54 ~~~Dp~tGk~y~~P~ 68 (238) +-+||.||+.|-+.- T Consensus 2 RR~DP~TG~iYH~~f 16 (31) T d1zaka2 2 RRLDPVTGKIYHLKY 16 (31) T ss_dssp EEECTTTCCEEESSS T ss_pred CCCCCCCCCEEEEEC T ss_conf 767887776867752 No 3 >d1mula_ a.55.1.1 (A:) HU protein {Escherichia coli [TaxId: 562]} Probab=18.72 E-value=21 Score=13.07 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=26.8 Q ss_pred CCCCCCCEEEEECCCCEEECCCCCCEEECCCC Q ss_conf 65886513688659840325667732213542 Q 537021.9.peg.1 38 RMTPDGIWQYKTSGVDKIIDSFIGREISIPHY 69 (238) Q Consensus 38 q~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~ 69 (238) ...-+|++.-+...--.-.+|.||..+.||-. T Consensus 43 ~l~gfG~F~~~~~~~R~grNP~Tge~i~ip~k 74 (90) T d1mula_ 43 QLVGFGTFKVNHRAERTGRNPQTGKEIKIAAA 74 (90) T ss_dssp EETTTEEEEEEEECC--------------CCE T ss_pred EECCCEEEEEEECCCEEEECCCCCCEEEECCC T ss_conf 86572489998537611188899988996486 No 4 >d1gp0a_ b.64.1.1 (A:) Cation-independent mannose-6-phosphate receptor (MIR-receptor) {Human (Homo sapiens) [TaxId: 9606]} Probab=17.75 E-value=23 Score=12.78 Aligned_cols=16 Identities=6% Similarity=0.254 Sum_probs=10.1 Q ss_pred EEECCCCCCEEECCCC Q ss_conf 0325667732213542 Q 537021.9.peg.1 54 KIIDSFIGREISIPHY 69 (238) Q Consensus 54 ~~~Dp~tGk~y~~P~~ 69 (238) +++||.+|.+|++-.. T Consensus 3 ~v~dp~~g~~yDLs~L 18 (133) T d1gp0a_ 3 QVTNPSTGHLFDLSSL 18 (133) T ss_dssp EEECTTTCCEEECGGG T ss_pred EEECCCCCCEEECHHH T ss_conf 8987899988969488 No 5 >d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]} Probab=17.09 E-value=21 Score=13.08 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=11.3 Q ss_pred HHHHHHHHHCCCCCHH Q ss_conf 9999987606765758 Q 537021.9.peg.1 172 DLETKLHNQGLVSGSV 187 (238) Q Consensus 172 aLetrLaNQGl~~GS~ 187 (238) +++.||..-||.||++ T Consensus 21 ~~~~RL~~mGl~pG~~ 36 (75) T d2gcxa1 21 AYRQKLLSLGMLPGSS 36 (75) T ss_dssp HHHHHHTTTTCCSSEE T ss_pred HHHHHHHHCCCCCCCE T ss_conf 9999999769999989 No 6 >d1p71a_ a.55.1.1 (A:) HU protein {Anabaena sp. [TaxId: 1167]} Probab=16.01 E-value=26 Score=12.51 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=26.5 Q ss_pred CCCCCCCEEEEECCCCEEECCCCCCEEECCCC Q ss_conf 65886513688659840325667732213542 Q 537021.9.peg.1 38 RMTPDGIWQYKTSGVDKIIDSFIGREISIPHY 69 (238) Q Consensus 38 q~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~ 69 (238) ....+|++..+...--.-++|.||..+.+|-. T Consensus 43 ~l~~fG~F~~~~~~~R~grNP~Tge~i~ip~k 74 (94) T d1p71a_ 43 TLVGFGSFESRERKAREGRNPKTNEKMEIPAT 74 (94) T ss_dssp EETTTEEEEEEEECCEEEECTTTCCEEEECCE T ss_pred EEECEEEEEEEECCCCEEECCCCCCEEEECCC T ss_conf 99343789888236630488999988986287 No 7 >d1huua_ a.55.1.1 (A:) HU protein {Bacillus stearothermophilus [TaxId: 1422]} Probab=13.66 E-value=30 Score=12.12 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=29.7 Q ss_pred HHHHHHHHCCCCC-CCCCCCEEEEECCCCEEECCCCCCEEECCCCC Q ss_conf 8998777356776-58865136886598403256677322135421 Q 537021.9.peg.1 26 NASANAYRENIDR-MTPDGIWQYKTSGVDKIIDSFIGREISIPHYL 70 (238) Q Consensus 26 TA~an~~lnnvNq-~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~t 70 (238) -.+.+...++-.- ..=+|++.-+.-.--.-++|.||.++.+|-.. T Consensus 30 ~~i~~~L~~~~~v~i~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k~ 75 (90) T d1huua_ 30 DSITEALRKGDKVQLIGFGNFEVRERAARKGRNPQTGEEMEIPASK 75 (90) T ss_dssp HHHHHHHHTTCCEEETTTEEEEEEEECCB----------TTBCCEE T ss_pred HHHHHHHHCCCCEEEECEEEEEEEECCCEEEECCCCCCEEEECCCC T ss_conf 9999998539964760457999997166210888999889953873 No 8 >d2o97b1 a.55.1.1 (B:1-90) HU protein {Escherichia coli, beta-isoform [TaxId: 562]} Probab=13.06 E-value=31 Score=12.01 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=23.3 Q ss_pred CCCCCCEEEEECCCCEEECCCCCCEEECCCC Q ss_conf 5886513688659840325667732213542 Q 537021.9.peg.1 39 MTPDGIWQYKTSGVDKIIDSFIGREISIPHY 69 (238) Q Consensus 39 ~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~ 69 (238) ..-+|++.-+...--.-.+|.||..|.||-. T Consensus 44 l~~fG~F~~~~~~~r~~rNP~Tge~i~ip~k 74 (90) T d2o97b1 44 LVGFGTFAVKERAARTGRNPQTGKEITIAAA 74 (90) T ss_dssp ETTTEEEEEECCC------------------ T ss_pred CCCEEEEEEEEECCCEEECCCCCCEEEECCC T ss_conf 2422799998504640088999978995287 No 9 >d1exea_ a.55.1.1 (A:) Transcription factor 1, TF1 {Bacteriophage SPO1 [TaxId: 10685]} Probab=12.97 E-value=30 Score=12.06 Aligned_cols=32 Identities=9% Similarity=-0.097 Sum_probs=24.8 Q ss_pred CCCCCCCEEEEECCCCEEECCCCCCEEECCCC Q ss_conf 65886513688659840325667732213542 Q 537021.9.peg.1 38 RMTPDGIWQYKTSGVDKIIDSFIGREISIPHY 69 (238) Q Consensus 38 q~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~ 69 (238) ...-+|+...+...--.-.+|.||..|.||-. T Consensus 43 ~l~gfG~F~~~~r~~r~grNP~Tge~i~ip~~ 74 (99) T d1exea_ 43 QLTGFLNIKPVARQARKGFNPQTQEALEIAPS 74 (99) T ss_dssp CBTTTBCCCCCCCCCCCCCCSSSSSCCCCCCC T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCEEEECCC T ss_conf 87534689997046633178699998986486 No 10 >d1owfa_ a.55.1.1 (A:) Integration host factor alpha subunit (IHFA) {Escherichia coli [TaxId: 562]} Probab=12.56 E-value=32 Score=11.92 Aligned_cols=31 Identities=13% Similarity=0.160 Sum_probs=24.7 Q ss_pred CCCCCCEEEEECCCCEEECCCCCCEEECCCC Q ss_conf 5886513688659840325667732213542 Q 537021.9.peg.1 39 MTPDGIWQYKTSGVDKIIDSFIGREISIPHY 69 (238) Q Consensus 39 ~TP~GsltYsq~g~~~~~Dp~tGk~y~~P~~ 69 (238) ..-+|++.-+...--.-.+|.||.+|.||-. T Consensus 45 l~gfGtF~~~~~~~r~~rNP~Tge~i~ip~~ 75 (96) T d1owfa_ 45 LSGFGNFDLRDKNQRPGRNPKTGEDIPITAR 75 (96) T ss_dssp ETTTEEEEEEEECCEEEECSSSCCEEEECCE T ss_pred ECCEEEEEEEECCCCCEECCCCCCEEEECCC T ss_conf 6677789999606601268899988985486 Done!