RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= 537021.9.peg.1064_1
(238 letters)
>gnl|CDD|182091 PRK09814, PRK09814, beta-1,6-galactofuranosyltransferase;
Provisional.
Length = 333
Score = 28.8 bits (65), Expect = 1.2
Identities = 8/31 (25%), Positives = 20/31 (64%)
Query: 134 ASLEERKEILYNYPTMGSQQYEKAFLDRLQS 164
ASL+ +++ +PT ++++ F+D+L+
Sbjct: 60 ASLKPGDIVIFQFPTWNGFEFDRLFVDKLKK 90
>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases. This family
consists of L-diaminobutyric acid transaminases. This
general designation covers both 2.6.1.76
(diaminobutyrate-2-oxoglutarate transaminase, which uses
glutamate as the amino donor in DABA biosynthesis), and
2.6.1.46 (diaminobutyrate--pyruvate transaminase, which
uses alanine as the amino donor). Most members with
known function are 2.6.1.76, and at least some
annotations as 2.6.1.46 in current databases at time of
model revision are incorrect. A distinct branch of this
family contains examples of 2.6.1.76 nearly all of which
are involved in ectoine biosynthesis. A related enzyme
is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also
called GABA transaminase. These enzymes all are
pyridoxal phosphate-containing class III
aminotransferase.
Length = 442
Score = 28.4 bits (63), Expect = 1.6
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 151 SQQYEKAFLDRLQSSLQQDRE-DLETKLHNQGLVSGSVAWNRAIDETNRKLHDVRL 205
S +Y + F++ ++S + + LE G+V+ W + I E RK HD++L
Sbjct: 189 SIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRK-HDIKL 243
>gnl|CDD|119294 pfam10774, BssS, Biofilm regulator BssS. BssS (also known as YliH)
regulates Escherichia coli K-12 biofilm formation
through quorum sensing. BssS is also involved in
motility regulation as it represses motility 7 fold by
decreasing transcription of the flagella and motility
loci.
Length = 112
Score = 28.2 bits (63), Expect = 1.8
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 190 NRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEK 224
+ A E +R+L + L+A A + + RLD IQ++
Sbjct: 21 HSASSEADRQLVEALLSAHTSAVEGRRRLDAIQQE 55
>gnl|CDD|184289 PRK13737, PRK13737, conjugal transfer pilus assembly protein TraU;
Provisional.
Length = 330
Score = 27.8 bits (62), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 162 LQSSLQQDREDLETKLHNQGLVSGSVAWNRAI 193
LQSSL E + KLH QG++ ++ N A+
Sbjct: 236 LQSSLLVS-ERMAFKLHRQGMIMETIGKNNAV 266
>gnl|CDD|161756 TIGR00194, uvrC, excinuclease ABC, C subunit. This family consists
of the DNA repair enzyme UvrC, an ABC excinuclease
subunit which interacts with the UvrA/UvrB complex to
excise UV-damaged nucleotide segments.
Length = 574
Score = 27.3 bits (61), Expect = 3.8
Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 53 DKIIDSFIGREISIPHYLQSYSLHPIQQQIH-NRQNINNLLLSDLLTQ 99
D+++++F+ + Y Q Y I +I + + LL DLL++
Sbjct: 282 DELVETFLIQ-----FYQQGYQNRLIPSEILVSLSLEDLKLLEDLLSE 324
>gnl|CDD|185134 PRK15212, PRK15212, virulence protein SpvA; Provisional.
Length = 255
Score = 27.1 bits (59), Expect = 4.7
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 70 LQSYSLHPIQQQIHNRQNINNLLL-SDLLTQRIQDLLPHHHTH 111
L S ++ IQ Q R ++ L++ +D + Q+I LLP+H H
Sbjct: 97 LSSSAVGGIQGQAERRPDLATLMVVNDAINQQIPTLLPYHFPH 139
>gnl|CDD|184888 PRK14894, PRK14894, glycyl-tRNA synthetase; Provisional.
Length = 539
Score = 26.9 bits (59), Expect = 4.9
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 119 PPQQLRDNDVPEKPNASLEERK-EILYNYPTMGSQQYE 155
P ++ DVP A +R +++Y+YP +G Q+ E
Sbjct: 226 PRSRITIYDVPPDELAHYSKRTFDLMYDYPNIGVQEIE 263
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 26.6 bits (59), Expect = 6.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 17/83 (20%)
Query: 134 ASLEERKEILYNYPTMGSQQYE----------KAFLDRLQSSLQQDREDLETKLHNQG-- 181
+ EE K+I+ Y + YE ++R + Q+++E E ++ NQ
Sbjct: 68 NAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVD 127
Query: 182 ---LVSGSVAWNRAIDE-TNRKL 200
L+S S A +IDE +R+L
Sbjct: 128 LAVLLS-SKALEESIDESEHRRL 149
>gnl|CDD|150824 pfam10209, DUF2340, Uncharacterized conserved protein (DUF2340).
This is a family of small proteins of approximately 150
amino acids of unknown function.
Length = 122
Score = 26.1 bits (58), Expect = 8.0
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 87 NINNLLLS--DLLTQRIQDLLPHHHTHVNTTKDFPP 120
N+ N++ DL +DLL + T P
Sbjct: 13 NVKNVVFHDIDLKDTTAKDLLEDVKADIQTRGSLRP 48
>gnl|CDD|184853 PRK14851, PRK14851, hypothetical protein; Provisional.
Length = 679
Score = 26.0 bits (57), Expect = 9.0
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 189 WNRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEKHAYF 228
W R TNRK + R +D + R+ +I H +F
Sbjct: 432 WKR---CTNRKPYSKRPLPEWVLNDLKTRIRSIPGAHLHF 468
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.130 0.369
Gapped
Lambda K H
0.267 0.0659 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,851,590
Number of extensions: 238835
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 21
Length of query: 238
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,028,145
Effective search space: 592137315
Effective search space used: 592137315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (25.5 bits)