BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1064_1
         (238 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1064_1 
          Length = 238

 Score =  489 bits (1260), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/238 (100%), Positives = 238/238 (100%)

Query: 1   MGKQRASLAPDPKAIASLQLSANLANASANAYRENIDRMTPDGIWQYKTSGVDKIIDSFI 60
           MGKQRASLAPDPKAIASLQLSANLANASANAYRENIDRMTPDGIWQYKTSGVDKIIDSFI
Sbjct: 1   MGKQRASLAPDPKAIASLQLSANLANASANAYRENIDRMTPDGIWQYKTSGVDKIIDSFI 60

Query: 61  GREISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPP 120
           GREISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPP
Sbjct: 61  GREISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLLPHHHTHVNTTKDFPP 120

Query: 121 QQLRDNDVPEKPNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQ 180
           QQLRDNDVPEKPNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQ
Sbjct: 121 QQLRDNDVPEKPNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQ 180

Query: 181 GLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEKHAYFHNLAQAQGLQ 238
           GLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEKHAYFHNLAQAQGLQ
Sbjct: 181 GLVSGSVAWNRAIDETNRKLHDVRLAAMLKASDEQERLDNIQEKHAYFHNLAQAQGLQ 238


>gi|254780635|ref|YP_003065048.1| hypothetical protein CLIBASIA_02610 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 412

 Score = 29.3 bits (64), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 132 PNASLEERKEILYNYPTMGSQQYEKAFLDRLQSSLQQDREDLETKLHNQGLVSGSVAWNR 191
           PN SLE+   +L NY T+   +YE A +     +L    E L T  + + L +  + W R
Sbjct: 22  PNVSLEK---VLQNYATIAHAKYEDALM--CARTLDSAIETLVTTPNKKNLENARLQWIR 76

Query: 192 A 192
           A
Sbjct: 77  A 77


>gi|254780334|ref|YP_003064747.1| DNA repair protein RadA [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 479

 Score = 23.9 bits (50), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 188 AWNRAIDETNRKLHDVRLAAMLK 210
           AWN  I++++RK  D R +  +K
Sbjct: 29  AWNTIIEDSSRKESDQRFSKTIK 51


>gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 355

 Score = 23.5 bits (49), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 19/43 (44%)

Query: 63  EISIPHYLQSYSLHPIQQQIHNRQNINNLLLSDLLTQRIQDLL 105
           EI     ++SY L P Q     R NI     SD+L   + D +
Sbjct: 305 EIGWGRQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFM 347


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.130    0.369 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,374
Number of Sequences: 1233
Number of extensions: 5868
Number of successful extensions: 13
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 9
length of query: 238
length of database: 328,796
effective HSP length: 71
effective length of query: 167
effective length of database: 241,253
effective search space: 40289251
effective search space used: 40289251
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 37 (18.9 bits)