Query 537021.9.peg.1073_1
Match_columns 162
No_of_seqs 114 out of 241
Neff 7.0
Searched_HMMs 39220
Date Wed May 25 06:39:03 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1073.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 pfam10124 Mu-like_gpT Mu-like 76.4 6.5 0.00017 19.9 5.6 66 8-81 217-290 (291)
2 pfam09950 DUF2184 Uncharacteri 63.5 13 0.00032 18.2 9.0 128 15-154 109-246 (247)
3 cd01840 SGNH_hydrolase_yrhL_li 50.0 20 0.0005 17.0 3.2 30 8-40 59-88 (150)
4 pfam08756 YfkB YfkB-like domai 44.5 26 0.00066 16.3 5.0 77 10-87 10-96 (153)
5 COG2062 SixA Phosphohistidine 42.1 28 0.00072 16.1 4.5 83 9-92 22-112 (163)
6 TIGR00576 dut dUTP diphosphata 37.6 24 0.00061 16.5 2.1 24 69-92 75-99 (151)
7 pfam05065 Phage_capsid Phage c 36.6 35 0.00088 15.6 12.6 123 12-153 149-277 (278)
8 pfam07068 Gp23 Major capsid pr 34.1 38 0.00097 15.3 8.7 135 11-155 335-484 (493)
9 KOG0922 consensus 33.9 38 0.00097 15.3 3.6 47 8-54 172-219 (674)
10 pfam11343 DUF3145 Protein of u 24.3 52 0.0013 14.5 2.0 48 105-153 57-104 (158)
11 pfam03864 Phage_cap_E Phage ma 21.8 63 0.0016 14.0 4.8 36 15-50 180-216 (345)
12 COG3051 CitF Citrate lyase, al 20.7 51 0.0013 14.6 1.3 18 72-90 436-453 (513)
13 KOG2121 consensus 20.5 67 0.0017 13.8 3.0 60 80-144 592-653 (746)
No 1
>pfam10124 Mu-like_gpT Mu-like prophage major head subunit gpT. Members of this family of proteins comprise various caudoviral prophage proteins, including the Mu-like prophage major head subunit gpT.
Probab=76.41 E-value=6.5 Score=19.91 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHH---HCCC-----CCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEEC
Q ss_conf 8865317899999999999---7699-----8348999499999999861243113454214677655415556789971
Q 537021.9.peg.1 8 GTQRTFSKQILDEVMQEGY---QNGD-----NFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDR 79 (162)
Q Consensus 8 GT~~~lTE~~l~~~lq~i~---~~GG-----~~~~i~v~p~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~s 79 (162)
|...+||++.+..+.+.+- ..|| .|++|.|+|++-...-.+..... ...+..+...+.+++.|+
T Consensus 217 ~sk~~L~a~n~~aA~~aM~~~k~DgGrpLgi~Pt~LVVpPsLE~aAr~ll~~e~--------i~~G~tN~~kg~~ellV~ 288 (291)
T pfam10124 217 ASKAPLTAANYWAARAAMMAMKGDGGRPLGIRPTTLVVPPSLEGAARKLLERER--------IEGGASNPWKGTAELVVS 288 (291)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHH--------CCCCCCCCCCCCEEEEEC
T ss_conf 474668989999999999845146996735425758868217999999998651--------258986636770689833
Q ss_pred CC
Q ss_conf 84
Q 537021.9.peg.1 80 PF 81 (162)
Q Consensus 80 df 81 (162)
||
T Consensus 289 p~ 290 (291)
T pfam10124 289 PW 290 (291)
T ss_pred CC
T ss_conf 78
No 2
>pfam09950 DUF2184 Uncharacterized protein conserved in bacteria (DUF2184). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=63.51 E-value=13 Score=18.20 Aligned_cols=128 Identities=11% Similarity=0.123 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHCCC---CCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEEC-CCEEEEEEECC
Q ss_conf 8999999999997699---8348999499999999861243113454214677655415556789971-84267998256
Q 537021.9.peg.1 15 KQILDEVMQEGYQNGD---NFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDR-PFGKVMVHPNR 90 (162)
Q Consensus 15 E~~l~~~lq~i~~~GG---~~~~i~v~p~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~s-dfG~v~ivpnr 90 (162)
.++|++++.++|..-+ .|++|++.|.+-..|+.-..+...-.-+- .....-..|.. ..-.+.|.+-+
T Consensus 109 l~dln~~~~~i~~~s~~~~~p~tlllp~~~~~~l~~~~~s~~~~~Tvl---------~~~~~nn~~~~~~g~~l~I~~v~ 179 (247)
T pfam09950 109 LADVNEALTKIWTATGGVEQPDTLLLPPSQFLYLSSTVVSPATNITIL---------EFLKENNIYTAQTGRPLTIRGVK 179 (247)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEECHHHHHHHHCEEECCCCCCCHH---------HHHHHCCCCCCCCCCCEEEEECH
T ss_conf 999999999998860983679867749999998735400688996898---------99875770000578981699716
Q ss_pred CCC-CCCCCCEE--EEEECHHHEEEEECCCCCEECCCCCCCCCEEEEEEE--E-EEEEEECHHHCEEEEC
Q ss_conf 568-87644205--999846454531027642000136678822679999--9-8758708000689974
Q 537021.9.peg.1 91 VMA-SNAETARN--AFLIDPNMLEFLWLRTIHEDKNIAKNGDANKGVLIG--E-GALKVRNEKAVGVVAD 154 (162)
Q Consensus 91 ~~~-~~~~~~~~--~~ilD~~~~~~~~Lr~~~~~e~laktGD~~k~~i~~--E-~tL~~~n~~a~g~I~d 154 (162)
++- ++...... +|--||+++++..=.|+.+. +. .. .+....+-+ . .|++++-|++...+-+
T Consensus 180 ~L~~ag~~g~dr~v~Y~~d~~~v~~~vP~p~~~l-p~-q~-~~l~~~vp~~~r~gGv~~~~P~a~~y~dG 246 (247)
T pfam09950 180 ELEGAGTGGTDRMVAYTKDPDYVKFPLPMPLTFL-PA-QP-RGLRFKVPGISRLGGVEVRYPDAIVYVDG 246 (247)
T ss_pred HHHHCCCCCCCEEEEEECCCCEEEEECCCCHHHC-CC-EE-CCCEEEEEEEEEEEEEEEEECCEEEECCC
T ss_conf 6552588897379999748012776257660006-76-42-68479975588852499970244895157
No 3
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=49.97 E-value=20 Score=17.03 Aligned_cols=30 Identities=33% Similarity=0.547 Sum_probs=21.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECHH
Q ss_conf 886531789999999999976998348999499
Q 537021.9.peg.1 8 GTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPY 40 (162)
Q Consensus 8 GT~~~lTE~~l~~~lq~i~~~GG~~~~i~v~p~ 40 (162)
||+.++++..++.+|+.+ |....++++++.
T Consensus 59 GTNg~~~~~~~~~~l~~l---g~~r~v~lVn~~ 88 (150)
T cd01840 59 GTNGPFTKDQLDELLDAL---GPDRQVYLVNPH 88 (150)
T ss_pred CCCCCCCHHHHHHHHHHH---CCCCEEEEEECC
T ss_conf 589988999999999983---899879999588
No 4
>pfam08756 YfkB YfkB-like domain. This protein is adjacent to YfkA in B. subtilis. In other bacterial species it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=44.51 E-value=26 Score=16.32 Aligned_cols=77 Identities=19% Similarity=0.204 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCC-EEE-------ECH--HHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEEC
Q ss_conf 653178999999999997699834-899-------949--9999999861243113454214677655415556789971
Q 537021.9.peg.1 10 QRTFSKQILDEVMQEGYQNGDNFR-HII-------VSP--YVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDR 79 (162)
Q Consensus 10 ~~~lTE~~l~~~lq~i~~~GG~~~-~i~-------v~p--~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~s 79 (162)
-..|+.+.+++++..+-+---+.- +++ |++ .-.+.+..+...-. .+.+....|...-++-+-.=++|||
T Consensus 10 L~vlsL~e~r~aIh~LLd~Rd~~~WMLFGTLPfypCs~~~eD~~Ll~rL~~~~N-VTvRNDPDGRsRLNVNiFtG~viVT 88 (153)
T pfam08756 10 LEVLSLDEIREAIHRLLDIRDENVWMLFGTLPFYPCSPDEEDQALLKRLRKAKN-VTVRNDPDGRSRLNVNIFTGDVIVT 88 (153)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC-CEEECCCCCCCEEEEEEECCCEEEE
T ss_conf 754789999999999972669885788545553447999889999999986899-5661499864223346632887985
Q ss_pred CCEEEEEE
Q ss_conf 84267998
Q 537021.9.peg.1 80 PFGKVMVH 87 (162)
Q Consensus 80 dfG~v~iv 87 (162)
|||...-+
T Consensus 89 DFgd~~~l 96 (153)
T pfam08756 89 DFGDEPPL 96 (153)
T ss_pred CCCCCCCC
T ss_conf 57888774
No 5
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=42.10 E-value=28 Score=16.10 Aligned_cols=83 Identities=14% Similarity=0.187 Sum_probs=45.6
Q ss_pred CCCCCCHHHHHHHH---HHHHHCCCCCCEEEECHHHHHH-----HHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECC
Q ss_conf 86531789999999---9999769983489994999999-----998612431134542146776554155567899718
Q 537021.9.peg.1 9 TQRTFSKQILDEVM---QEGYQNGDNFRHIIVSPYVKSE-----FVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRP 80 (162)
Q Consensus 9 T~~~lTE~~l~~~l---q~i~~~GG~~~~i~v~p~~K~~-----is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~sd 80 (162)
-.|+||+.-++++. +-+-..|..|+.|+|+|..+-. +...++........... ..+....+...++....+
T Consensus 22 ~dR~Lt~~G~~ea~~~a~~L~~~~~~~D~VL~Spa~Ra~QTae~v~~~~~~~~~~~~~~l~-p~~d~~~~l~~l~~~~d~ 100 (163)
T COG2062 22 FDRPLTERGRKEAELVAAWLAGQGVEPDLVLVSPAVRARQTAEIVAEHLGEKKVEVFEELL-PNGDPGTVLDYLEALGDG 100 (163)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCCEECCCCC-CCCCHHHHHHHHHHHCCC
T ss_conf 4676888889999999999986699988799470588999999999860856534613658-899989999999973134
Q ss_pred CEEEEEEECCCC
Q ss_conf 426799825656
Q 537021.9.peg.1 81 FGKVMVHPNRVM 92 (162)
Q Consensus 81 fG~v~ivpnr~~ 92 (162)
.+.+-+|.|...
T Consensus 101 v~~vllVgH~P~ 112 (163)
T COG2062 101 VGSVLLVGHNPL 112 (163)
T ss_pred CCEEEEECCCCC
T ss_conf 765999788856
No 6
>TIGR00576 dut dUTP diphosphatase; InterPro: IPR008181 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase. The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA . The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes . Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif. Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process.
Probab=37.59 E-value=24 Score=16.53 Aligned_cols=24 Identities=21% Similarity=0.283 Sum_probs=20.0
Q ss_pred EEEEEEEEEECCC-EEEEEEECCCC
Q ss_conf 1555678997184-26799825656
Q 537021.9.peg.1 69 TIVATADIYDRPF-GKVMVHPNRVM 92 (162)
Q Consensus 69 ~i~~svd~y~sdf-G~v~ivpnr~~ 92 (162)
+|.++.-++.+|| |+|+|++=+|=
T Consensus 75 ~i~n~~GvID~DYRGE~kV~L~N~g 99 (151)
T TIGR00576 75 TIDNSPGVIDADYRGEIKVILINLG 99 (151)
T ss_pred EEECCCCEEECCCCCCEEEEEEECC
T ss_conf 9966781781787202689998589
No 7
>pfam05065 Phage_capsid Phage capsid family. Family of bacteriophage hypothetical proteins and capsid proteins.
Probab=36.65 E-value=35 Score=15.58 Aligned_cols=123 Identities=7% Similarity=-0.088 Sum_probs=68.9
Q ss_pred CCCHHHHHHHHH-HHHHCCCCCCEEEECHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEEEEEEEECCCEEEEEEECC
Q ss_conf 317899999999-9997699834899949999999986124311345421467765541555678997184267998256
Q 537021.9.peg.1 12 TFSKQILDEVMQ-EGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVMVHPNR 90 (162)
Q Consensus 12 ~lTE~~l~~~lq-~i~~~GG~~~~i~v~p~~K~~is~f~~~~~~~~~~~~~~~~~~~~~i~~svd~y~sdfG~v~ivpnr 90 (162)
..+-+.|.+++. .+=.+......++++|.....|..+-....++- .......... .+-.++|+.+.
T Consensus 149 ~~~~~~i~~~~~~~l~~~~~~~~~~v~n~~~~~~l~~lkd~~G~~l--~~~~~~~~~~-----------~l~G~pv~~~~ 215 (278)
T pfam05065 149 GNTADDLIDLIYASLDAAYRANAVWVMNPSTLAALRKLKDANGRYL--WQPSLTAGTP-----------TLLGRPVVVTE 215 (278)
T ss_pred CCCHHHHHHHHHHHCCCCCCCCCEEEECHHHHHHHHHHCCCCCCEE--ECCCCCCCCC-----------CEEEEEEEEEC
T ss_conf 4259999999860224013537699988999999985225699778--4356667887-----------07101578748
Q ss_pred CCCCCCCCCEEEEEECHHHEEEEECCCCCEECCCCC-----CCCCEEEEEEEEEEEEEECHHHCEEEE
Q ss_conf 568876442059998464545310276420001366-----788226799999875870800068997
Q 537021.9.peg.1 91 VMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAK-----NGDANKGVLIGEGALKVRNEKAVGVVA 153 (162)
Q Consensus 91 ~~~~~~~~~~~~~ilD~~~~~~~~Lr~~~~~e~lak-----tGD~~k~~i~~E~tL~~~n~~a~g~I~ 153 (162)
+|+.. ++++-|.+.+.+..-.++ ..+-+-. .=|.........+...+++++|...+.
T Consensus 216 ~~~~~-----~~~~Gdfs~~~~~~~~~~-~i~~~~~~~~~f~~~~~~~r~~~r~d~~v~~~~A~~~l~ 277 (278)
T pfam05065 216 DMPDG-----PILFGDFSAYIIVDREGV-TVERLRDPYTAFEKNQVGFRATERVDGAVVDPEAFKKLK 277 (278)
T ss_pred CCCCC-----CEEEEEHHHCEEEEECCC-EEEEECCCHHHCCCCEEEEEEEEEECCCCCCHHHEEEEE
T ss_conf 99867-----199981288899994784-899951551221488499999999888383763745864
No 8
>pfam07068 Gp23 Major capsid protein Gp23. This family contains a number of major capsid Gp23 proteins approximately 500 residues long, from T4-like bacteriophages.
Probab=34.14 E-value=38 Score=15.34 Aligned_cols=135 Identities=12% Similarity=0.018 Sum_probs=63.6
Q ss_pred CCCCHHHHHHHHHHHHH---------CCCCCCEEEECHHHHHHHHHHH---CCCCEEEE---EECCCCCCCCCEEEEEEE
Q ss_conf 53178999999999997---------6998348999499999999861---24311345---421467765541555678
Q 537021.9.peg.1 11 RTFSKQILDEVMQEGYQ---------NGDNFRHIIVSPYVKSEFVRFM---SDSNVASF---RYATSGKSHNNTIVATAD 75 (162)
Q Consensus 11 ~~lTE~~l~~~lq~i~~---------~GG~~~~i~v~p~~K~~is~f~---~~~~~~~~---~~~~~~~~~~~~i~~svd 75 (162)
..++-..|+.++.+|=. .=|.-+.|+|+|++...+.-.. ........ .....+...-+++.+...
T Consensus 335 ~RWsvEkfkgL~~qIereAN~Ia~~TRRGkgNfivcS~dVASaL~m~~~g~~~~~~~~~~~l~vddtg~tfaG~LnGr~k 414 (493)
T pfam07068 335 ARWAGESFKALLFQIDKEAVEIARQTGRGEGNFIIASRNVVNVLASVDTGISYAAQGLASGFNTDTTKSVFAGVLGGKYR 414 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCEEE
T ss_conf 64205899999999999999999970778674899888999999722344544442346775557767647888466478
Q ss_pred EEECCCEEEEEEECCCCCCCCCCCEEEEEECHHHEEEEECCCCCEECCCCCCCCCEEEEEEEEEEEEEECHHHCEEEECC
Q ss_conf 99718426799825656887644205999846454531027642000136678822679999987587080006899742
Q 537021.9.peg.1 76 IYDRPFGKVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNGDANKGVLIGEGALKVRNEKAVGVVADL 155 (162)
Q Consensus 76 ~y~sdfG~v~ivpnr~~~~~~~~~~~~~ilD~~~~~~~~Lr~~~~~e~laktGD~~k~~i~~E~tL~~~n~~a~g~I~dl 155 (162)
||+-+|-.-+.+.==+=.+... |+=++=--|+.+-.+|.......-+|-| ..+-||+.. ||-|.|.-.++
T Consensus 415 VYiDPYa~~~y~~vGYKG~s~y---DaG~fYcPYVPL~m~rav~~~~fqP~ig------fkTRYg~v~-npfa~~~~~~~ 484 (493)
T pfam07068 415 VYIDQYAKQDYFTVGYKGANEM---DAGIYYAPYVALTPLRGSDPKNFQPVMG------FKTRYGIGV-NPFAESSLQAP 484 (493)
T ss_pred EEECCCCCCCEEEEEECCCCHH---HCCEEECCCCCEEEEECCCCCCCCCCEE------EEEECEECC-CCCCCCCCCCC
T ss_conf 9957877676699984569943---3744324765426652206888766440------033000003-65445655788
No 9
>KOG0922 consensus
Probab=33.91 E-value=38 Score=15.31 Aligned_cols=47 Identities=15% Similarity=0.358 Sum_probs=40.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCEEEECHH-HHHHHHHHHCCCCE
Q ss_conf 886531789999999999976998348999499-99999986124311
Q 537021.9.peg.1 8 GTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPY-VKSEFVRFMSDSNV 54 (162)
Q Consensus 8 GT~~~lTE~~l~~~lq~i~~~GG~~~~i~v~p~-~K~~is~f~~~~~~ 54 (162)
.-.|.+.-+.|..+|+++-..=.+.++|+++++ +..+||.|+.+.-.
T Consensus 172 AHERsl~TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~i 219 (674)
T KOG0922 172 AHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAPI 219 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECHHHHHHHHCCCCE
T ss_conf 231015788999999998732778369999235248999998647956
No 10
>pfam11343 DUF3145 Protein of unknown function (DUF3145). This family of proteins with unknown function appear to be restricted to Actinobacteria.
Probab=24.30 E-value=52 Score=14.53 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=34.2
Q ss_pred ECHHHEEEEECCCCCEECCCCCCCCCEEEEEEEEEEEEEECHHHCEEEE
Q ss_conf 8464545310276420001366788226799999875870800068997
Q 537021.9.peg.1 105 IDPNMLEFLWLRTIHEDKNIAKNGDANKGVLIGEGALKVRNEKAVGVVA 153 (162)
Q Consensus 105 lD~~~~~~~~Lr~~~~~e~laktGD~~k~~i~~E~tL~~~n~~a~g~I~ 153 (162)
|-...-...||| |.-+|+-....|+.+++..-|.||-.-+-.+||-|.
T Consensus 57 lAsaLr~W~~LR-FEVtE~~s~G~DG~r~~~TP~LGl~~a~~~~~Gdiv 104 (158)
T pfam11343 57 LASALRGWPHLR-FEVTEDPSPGADGGRWSHTPDLGIFHAQTDAAGDVV 104 (158)
T ss_pred HHHHHHCCCCEE-EEEEECCCCCCCCEEEEECCCCCEEECCCCCCCCEE
T ss_conf 999983488268-999966789977606985366531542337888886
No 11
>pfam03864 Phage_cap_E Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.
Probab=21.84 E-value=63 Score=14.01 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHC-CCCCCEEEECHHHHHHHHHHHC
Q ss_conf 89999999999976-9983489994999999998612
Q 537021.9.peg.1 15 KQILDEVMQEGYQN-GDNFRHIIVSPYVKSEFVRFMS 50 (162)
Q Consensus 15 E~~l~~~lq~i~~~-GG~~~~i~v~p~~K~~is~f~~ 50 (162)
-++|.+...++.++ |+.++++++++...+.|.++..
T Consensus 180 ~~Die~w~~~~~~~sg~~~~~~vm~~~a~~~f~~~~~ 216 (345)
T pfam03864 180 TDDIEEWADQVQKKAGGTVNVLIMGAKAWNAFMKFKA 216 (345)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHCHH
T ss_conf 6879999999998539964299987899999862999
No 12
>COG3051 CitF Citrate lyase, alpha subunit [Energy production and conversion]
Probab=20.73 E-value=51 Score=14.57 Aligned_cols=18 Identities=28% Similarity=0.597 Sum_probs=7.5
Q ss_pred EEEEEEECCCEEEEEEECC
Q ss_conf 5678997184267998256
Q 537021.9.peg.1 72 ATADIYDRPFGKVMVHPNR 90 (162)
Q Consensus 72 ~svd~y~sdfG~v~ivpnr 90 (162)
.+||+++||+| +.|-|+|
T Consensus 436 ~svDvlvTd~G-IavNP~R 453 (513)
T COG3051 436 SSVDVLVTDHG-IAVNPAR 453 (513)
T ss_pred CCEEEEEECCC-EEECCCC
T ss_conf 84228985152-5538897
No 13
>KOG2121 consensus
Probab=20.53 E-value=67 Score=13.84 Aligned_cols=60 Identities=13% Similarity=0.205 Sum_probs=41.5
Q ss_pred CCE--EEEEEECCCCCCCCCCCEEEEEECHHHEEEEECCCCCEECCCCCCCCCEEEEEEEEEEEEEE
Q ss_conf 842--67998256568876442059998464545310276420001366788226799999875870
Q 537021.9.peg.1 80 PFG--KVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNGDANKGVLIGEGALKVR 144 (162)
Q Consensus 80 dfG--~v~ivpnr~~~~~~~~~~~~~ilD~~~~~~~~Lr~~~~~e~laktGD~~k~~i~~E~tL~~~ 144 (162)
++| .+..+|-+|||... -+-|-+-..|+++|.-...=-+++.+-| .+.-.++-|.|||=-
T Consensus 592 ~~~l~~i~tc~viHCp~sy----g~~i~~~~~~Ki~YSGDTrP~~~~v~~g-~datlLIHEAT~ED~ 653 (746)
T KOG2121 592 ELGLESIQTCPVIHCPQSY----GCSITHGSGWKIVYSGDTRPCEDLVKAG-KDATLLIHEATLEDD 653 (746)
T ss_pred HCCCEEEEECCCEECCHHH----CEEEECCCCEEEEECCCCCCCHHHHHHC-CCCCEEEEEHHHCHH
T ss_conf 5485268864717547100----5358616624899837898756676532-687168760010104
Done!