RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.1073_1 (162 letters) >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Length = 365 Score = 26.7 bits (58), Expect = 1.1 Identities = 6/81 (7%), Positives = 20/81 (24%), Gaps = 6/81 (7%) Query: 28 NGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVMVH 87 GD+ R + + P + + + + + T + + P + Sbjct: 191 PGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP------ATHMPVYTHHSFPLIPPGIP 244 Query: 88 PNRVMASNAETARNAFLIDPN 108 + + + Sbjct: 245 DRDPETGKGLYRADVCALTFS 265 >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 Score = 26.5 bits (58), Expect = 1.3 Identities = 9/47 (19%), Positives = 14/47 (29%) Query: 83 KVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTIHEDKNIAKNGD 129 V + AR A + F R I ++ I + G Sbjct: 138 TVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGA 184 >d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Score = 26.1 bits (57), Expect = 1.5 Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Query: 83 KVMVHPNRVMASNAE---TARNAFLIDPNMLEFLWLR 116 ++ V P ++ + E TA +DPN L F L Sbjct: 5 QLTVSPAALVPGDPEVACTAHKVTPVDPNALSFSLLV 41 >d1p3y1_ c.34.1.1 (1:) MrsD {Bacillus sp. hil-y85/54728 [TaxId: 69002]} Length = 183 Score = 25.1 bits (54), Expect = 3.2 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 5/101 (4%) Query: 1 MTKKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRYA 60 MTK A+D D V E +NG H+ + + + + + + Sbjct: 40 MTKTAEDLIPAHTVSYFCDHVYSEHGENGKRHSHVEIGRWADIYCIIPATANILGQTANG 99 Query: 61 TSGKSHNNTIVATADIYDRPFGKVMVHPNRVMASNAETARN 101 + T++A + N +M + +RN Sbjct: 100 VAMNLVATTVLAH-----PHNTIFFPNMNDLMWNKTVVSRN 135 >d1zbma1 c.94.1.1 (A:2-261) Hypothetical protein AF1704 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 260 Score = 24.9 bits (54), Expect = 3.5 Identities = 11/76 (14%), Positives = 24/76 (31%), Gaps = 4/76 (5%) Query: 83 KVMVHPNRVMASNAETARNAFLIDPNMLEFLWLRTI--HEDKNIAKNGDANKGVLIGEGA 140 + + +A L+ +E + + + + G+LI EG Sbjct: 87 SEISLDGKRIAVPGRYTTANLLL-KLAVEDFEPVEMPFDRIIQAVLDEEVDAGLLIHEGQ 145 Query: 141 LKVRNEKAVGVVADLF 156 + + V DL+ Sbjct: 146 ITYADYGLK-CVLDLW 160 >d1ksoa_ a.39.1.2 (A:) Calcyclin (S100) {Human (Homo sapiens), s100a3 [TaxId: 9606]} Length = 93 Score = 24.8 bits (54), Expect = 4.2 Identities = 11/62 (17%), Positives = 21/62 (33%), Gaps = 13/62 (20%) Query: 1 MTKKAKDGTQRTFSKQILDEVMQEGYQNGD---NFRHIIVSPYVKSEFVRFMSDSNVASF 57 + K+ T F + ++ M N D +F E+VR ++ + Sbjct: 37 LQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFV----------EYVRSLACLCLYCH 86 Query: 58 RY 59 Y Sbjct: 87 EY 88 >d1vqoh1 d.41.4.1 (H:1-163) Ribosomal protein L10e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 163 Score = 24.4 bits (53), Expect = 5.3 Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 8/71 (11%) Query: 32 FRHIIVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNTIVATADIYDRPFGKVMVHPNRV 91 +R I Y + E++ + S +A AD Y ++ ++ Sbjct: 6 YRDIDKPAYTRREYITGIPGSKIAQH--------KMGRKQKDADDYPVQISLIVEETVQL 57 Query: 92 MASNAETARNA 102 + E +R + Sbjct: 58 RHGSLEASRLS 68 >d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens), s100a4 [TaxId: 9606]} Length = 93 Score = 24.1 bits (52), Expect = 6.1 Identities = 8/62 (12%), Positives = 20/62 (32%), Gaps = 13/62 (20%) Query: 1 MTKKAKDGTQRTFSKQILDEVMQEGYQNGD---NFRHIIVSPYVKSEFVRFMSDSNVASF 57 +T++ + + ++M N D +F E+ F+S + Sbjct: 37 LTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDF----------QEYCVFLSCIAMMCN 86 Query: 58 RY 59 + Sbjct: 87 EF 88 >d1gr0a2 d.81.1.3 (A:201-311) Myo-inositol 1-phosphate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 111 Score = 23.9 bits (52), Expect = 6.4 Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 11/57 (19%) Query: 3 KKAKDGTQRTFSKQILDEVMQEGYQNGDNFRHIIVSPYVKSEFVRFMSDSNVASFRY 59 ++K ++ L + HI S +V ++ D A R Sbjct: 45 LESKKISKTQAVTSNL------KREFKTKDVHIGPSDHVG-----WLDDRKWAYVRL 90 >d1zeda1 c.76.1.1 (A:1-479) Alkaline phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 479 Score = 23.6 bits (50), Expect = 8.8 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 7/93 (7%) Query: 11 RTFSKQILDEVMQEGYQNGDNFRHI-IVSPYVKSEFVRFMSDSNVASFRYATSGKSHNNT 69 R Q D++ E D F ++ + Y + V DS + Y K + T Sbjct: 53 RILKGQKKDKLGPEIPLAMDRFPYVALSKTYNVDKHV---PDSGATATAYLCGVKGNFQT 109 Query: 70 IVATADIYDRPFGKVMVHPNRVMASNAETARNA 102 I +A + + S A+ A Sbjct: 110 IGLSAAARFNQCNTTRGNE---VISVMNRAKKA 139 >d2fug31 b.52.2.2 (3:686-767) NADH-quinone oxidoreductase chain 3, Nqo3, C-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 82 Score = 23.6 bits (51), Expect = 9.5 Identities = 6/31 (19%), Positives = 8/31 (25%), Gaps = 2/31 (6%) Query: 58 RYATSGKSHNNTIVATADIYDRPFGKVMVHP 88 Y + V A R + HP Sbjct: 7 FYLRPTMWKAHQAVGKAQEAARAE--LWAHP 35 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.317 0.132 0.374 Gapped Lambda K H 0.267 0.0616 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 567,317 Number of extensions: 24211 Number of successful extensions: 77 Number of sequences better than 10.0: 1 Number of HSP's gapped: 77 Number of HSP's successfully gapped: 21 Length of query: 162 Length of database: 2,407,596 Length adjustment: 79 Effective length of query: 83 Effective length of database: 1,322,926 Effective search space: 109802858 Effective search space used: 109802858 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 49 (22.9 bits)