RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= 537021.9.peg.1074_1
(169 letters)
>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI-2, protein
structure initiative, structural genomics; 1.90A
{Shigella flexneri 2a str} (A:1-204)
Length = 204
Score = 29.4 bits (66), Expect = 0.25
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 21 SDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEGDEY 69
V RI P + + T + EW+VD G + G E
Sbjct: 154 DSAVDRIVPPSASATNDPLEVTVETFS-EWIVDKTQFKGALPNIPGXEL 201
>2c2n_A Malonyl COA-acyl carrier protein transacylase;
mitochondrial, malonyltrasferase, fatty acid synthase
alternative splicing, lipid synthesis; HET: AE4; 1.55A
{Homo sapiens} (A:153-234)
Length = 82
Score = 26.4 bits (58), Expect = 2.3
Identities = 8/78 (10%), Positives = 20/78 (25%), Gaps = 13/78 (16%)
Query: 49 EWVVDDLASPGPNAQLEGDEYSFKTINTPERMGNYTQIMRKSWILSGTQEAVDDVGYILK 108
+ + + +E P ++SG QEA+ +
Sbjct: 17 NFACLEAREHCKSLGIENPVCEVSNYLFP-----------DCRVISGHQEALRFLQKNS- 64
Query: 109 YKEQKLKKALEIRKDVEF 126
+ ++ + F
Sbjct: 65 -SKFHFRRTRMLPVSGAF 81
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein,
protein-fatty acid complex, riken structural
genomics/proteomics initiative, RSGI; HET: HEM PAM;
2.10A {Bacillus subtilis} (A:79-134,A:247-288,A:346-417)
Length = 170
Score = 25.8 bits (56), Expect = 3.0
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 10/45 (22%)
Query: 63 QLEGDEYS-----FKTINTPERMGNYTQIMRKSWILSGTQEAVDD 102
++G + F ++ TP ++M + W + AV
Sbjct: 8 GMDGSAHIHRKMLFLSLMTPPHQKRLAELMTEEW-----KAAVTR 47
>2wmm_A Chromosome partition protein MUKB; cell division, DNA
condensation, nucleotide-binding, cell cycle, coiled
coil, ATP-binding, DNA-binding, SMC; 2.30A {Escherichia
coli} (A:28-134)
Length = 107
Score = 25.9 bits (57), Expect = 3.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 20 LSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEG 66
LS++ ++ ED P +S + + H+I VV DL+ LEG
Sbjct: 17 LSEIYDDVSLEDAPYFSALYGPSRHAI----VVPDLS--QVTEHLEG 57
>3ibp_A Chromosome partition protein MUKB; structural maintenance
of chromosomes, SMC, condensin, cohesin, chromosome
segregation, hinge; 3.10A {Escherichia coli k-12}
(A:107-215)
Length = 109
Score = 25.9 bits (57), Expect = 3.3
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 20 LSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLASPGPNAQLEG 66
LS++ ++ ED P +S + + H+I VV DL+ LEG
Sbjct: 19 LSEIYDDVSLEDAPYFSALYGPSRHAI----VVPDLS--QVTEHLEG 59
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:234-256,A:435-732)
Length = 321
Score = 25.7 bits (55), Expect = 3.5
Identities = 7/41 (17%), Positives = 9/41 (21%)
Query: 42 TTHSIHPEWVVDDLASPGPNAQLEGDEYSFKTINTPERMGN 82
T W N EG E + + M
Sbjct: 253 TVCGAIIGWTRGTGLMSANNIIAEGIEKMGVRTFSQKEMAF 293
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase,
coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
(C:145-264)
Length = 120
Score = 25.4 bits (55), Expect = 3.8
Identities = 6/46 (13%), Positives = 10/46 (21%)
Query: 8 FITSSSTTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVD 53
I + ++ S + PEWV
Sbjct: 57 IIIPYTDPILRKDCMNEVHEKIKEQIKASDTIPKIARVVAPEWVDH 102
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B} (A:133-206)
Length = 74
Score = 25.1 bits (55), Expect = 4.7
Identities = 9/37 (24%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 90 SWILSGTQEAVDDVGYILKYKEQKLKKALEIRKDVEF 126
+++GT+ ++ I KE+ K+AL + F
Sbjct: 40 QVVIAGTKAGIEKACEIA--KEKGAKRALPLPVSAPF 74
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics,
PSI-2, protein structure initiative, midwest center for
structural genomics; 2.30A {Pseudomonas syringae PV}
(A:)
Length = 228
Score = 25.4 bits (56), Expect = 4.9
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 18 ESLSDVVSRIT 28
ESL+D V IT
Sbjct: 130 ESLNDQVRGIT 140
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacylase; FABD,
MCAT, transferase; 2.50A {Helicobacter pylori SS1}
(A:140-210,A:261-272)
Length = 83
Score = 25.2 bits (55), Expect = 5.0
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 90 SWILSGTQEAVDDVGYILKYKEQKLKKALEIRKDVEF 126
+L+G ++ + + L KE K+ + + V
Sbjct: 36 QVVLAGVKDDLKALEPTL--KEMGAKRVVFLEMSVAS 70
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.310 0.126 0.351
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,208,743
Number of extensions: 50402
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 14
Length of query: 169
Length of database: 4,956,049
Length adjustment: 82
Effective length of query: 87
Effective length of database: 2,184,039
Effective search space: 190011393
Effective search space used: 190011393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.6 bits)