Query 537021.9.peg.1078_1
Match_columns 62
No_of_seqs 36 out of 38
Neff 2.2
Searched_HMMs 33803
Date Wed May 25 06:15:33 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1078.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2wbn_A G2P, terminase large s 96.2 0.0013 3.8E-08 41.2 0.8 37 6-42 159-202 (212)
2 >1b33_N Phycobilisome 7.8 KD l 39.5 23 0.00068 17.9 2.6 23 6-28 32-54 (67)
3 >1c7n_A Cystalysin; transferas 37.6 7.3 0.00022 20.6 -0.2 22 6-27 36-57 (93)
4 >1eh6_A O6-alkylguanine-DNA al 32.9 21 0.00063 18.0 1.6 14 2-15 57-70 (82)
5 >1qnt_A Methylated-DNA--protei 32.9 21 0.00063 18.0 1.6 14 2-15 57-70 (82)
6 >1ih7_A DNA polymerase, GP43; 20.5 58 0.0017 15.7 1.9 17 1-17 29-45 (70)
7 >1iuf_A Centromere ABP1 protei 19.2 48 0.0014 16.1 1.2 15 4-20 33-47 (74)
8 >2c0c_A Zinc binding alcohol d 17.5 75 0.0022 15.0 1.9 22 1-27 158-180 (183)
9 >1noy_A Protein (DNA polymeras 14.0 1E+02 0.0031 14.3 1.9 18 1-18 26-43 (120)
10 >3cpe_A Terminase, DNA packagi 13.4 1E+02 0.0031 14.2 1.8 39 5-43 156-197 (209)
No 1
>>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A (A:)
Probab=96.21 E-value=0.0013 Score=41.19 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHC-------CCEEECHHHHHHHHHHHHHHH
Q ss_conf 2899999999875215-------816010001678999999999
Q 537021.9.peg.1 6 ECQEWLDEFHQYHRCE-------GRVIKEKDDLICASRYALMMK 42 (62)
Q Consensus 6 ~C~~Wf~Efr~YHRkd-------GKIVk~~DDlmsAtRYA~m~~ 42 (62)
.|.++.+|+..|.+++ .+.++..|+.++|.||+++..
T Consensus 159 ~C~~~i~el~~y~~~~~~~g~~~~~~~~~~dH~~DA~rY~~~~~ 202 (212)
T 2wbn_A 159 RTPNIAREFENIDYQTDKNGDPIPRLEDKDNHTIDATRYAFERD 202 (212)
T ss_dssp TCHHHHHHHHHCCEEECTTCCEEEEECSSSCHHHHHHHHHTGGG
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 68899999982882568999866888788862888889714035
No 2
>>1b33_N Phycobilisome 7.8 KD linker polypeptide; light-harvesting protein, cyanobacteria, allophycocyanin, linker polypeptides; HET: BLA CYC; 2.30A {Mastigocladus laminosus} (N:)
Probab=39.54 E-value=23 Score=17.85 Aligned_cols=23 Identities=17% Similarity=0.590 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHCCCEEECH
Q ss_conf 28999999998752158160100
Q 537021.9.peg.1 6 ECQEWLDEFHQYHRCEGRVIKEK 28 (62)
Q Consensus 6 ~C~~Wf~Efr~YHRkdGKIVk~~ 28 (62)
.-..||.|-..-..--|||+|..
T Consensus 32 py~nWf~EQQrIqK~GGkI~KVe 54 (67)
T 1b33_N 32 PYENWFREQQRIQKMGGKIVKVE 54 (67)
T ss_dssp EHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 56888889999998188089999
No 3
>>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} (A:1-36,A:288-319,A:375-399)
Probab=37.64 E-value=7.3 Score=20.57 Aligned_cols=22 Identities=27% Similarity=0.604 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHCCCEEEC
Q ss_conf 2899999999875215816010
Q 537021.9.peg.1 6 ECQEWLDEFHQYHRCEGRVIKE 27 (62)
Q Consensus 6 ~C~~Wf~Efr~YHRkdGKIVk~ 27 (62)
-|+.|++|+-.---++-|+|+.
T Consensus 36 fCe~WLde~I~vID~NQk~V~~ 57 (93)
T 1c7n_A 36 LCGKWLDGCIKVIDKNQRIVKD 57 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHCCCCCCCHHHHHHHH
T ss_conf 3355420111121024455555
No 4
>>1eh6_A O6-alkylguanine-DNA alkyltransferase; methyltransferase, DNA repair; 2.00A {Homo sapiens} (A:1-82)
Probab=32.95 E-value=21 Score=18.02 Aligned_cols=14 Identities=29% Similarity=1.146 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 13452899999999
Q 537021.9.peg.1 2 ESILECQEWLDEFH 15 (62)
Q Consensus 2 ~~~~~C~~Wf~Efr 15 (62)
|...+|.+|++-|=
T Consensus 57 epL~qC~~WL~aYF 70 (82)
T 1eh6_A 57 EPLMQCTAWLNAYF 70 (82)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 67999999999998
No 5
>>1qnt_A Methylated-DNA--protein-cysteine methyltransferase; DNA repair, alkyltransferase; 1.9A {Homo sapiens} (A:1-82)
Probab=32.95 E-value=21 Score=18.02 Aligned_cols=14 Identities=29% Similarity=1.146 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 13452899999999
Q 537021.9.peg.1 2 ESILECQEWLDEFH 15 (62)
Q Consensus 2 ~~~~~C~~Wf~Efr 15 (62)
|...+|.+|++-|=
T Consensus 57 epL~qC~~WL~aYF 70 (82)
T 1qnt_A 57 EPLMQCTAWLNAYF 70 (82)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 68999999999998
No 6
>>1ih7_A DNA polymerase, GP43; fingers, PALM, thumb, transferase; HET: DNA GMP; 2.21A {Enterobacteria phage RB69} (A:34-103)
Probab=20.55 E-value=58 Score=15.65 Aligned_cols=17 Identities=6% Similarity=0.558 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 91345289999999987
Q 537021.9.peg.1 1 LESILECQEWLDEFHQY 17 (62)
Q Consensus 1 ~~~~~~C~~Wf~Efr~Y 17 (62)
++||-||..|+.+++--
T Consensus 29 fdsi~eA~~W~k~m~~i 45 (70)
T 1ih7_A 29 FANMRDASQWIKRMEDI 45 (70)
T ss_dssp CSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCC
T ss_conf 89878999999983678
No 7
>>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} (A:1-74)
Probab=19.21 E-value=48 Score=16.11 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 45289999999987521
Q 537021.9.peg.1 4 ILECQEWLDEFHQYHRC 20 (62)
Q Consensus 4 ~~~C~~Wf~Efr~YHRk 20 (62)
--.|.+||+|- |+.+
T Consensus 33 qk~l~~WFe~~--y~q~ 47 (74)
T 1iuf_A 33 QQDLIEWFREK--FGKD 47 (74)
T ss_dssp HHHHHHHHHHH--HSSC
T ss_pred HHHHHHHHHHH--HCCC
T ss_conf 99999999999--8899
No 8
>>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} (A:1-140,A:320-362)
Probab=17.49 E-value=75 Score=15.03 Aligned_cols=22 Identities=32% Similarity=0.609 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHC-CCEEEC
Q ss_conf 913452899999999875215-816010
Q 537021.9.peg.1 1 LESILECQEWLDEFHQYHRCE-GRVIKE 27 (62)
Q Consensus 1 ~~~~~~C~~Wf~Efr~YHRkd-GKIVk~ 27 (62)
||||....++ ||-.|+ ||||-+
T Consensus 158 ~~~~~~~~~~-----~~~~~~~~~~~~~ 180 (183)
T 2c0c_A 158 LESIFRAVNY-----MYMGKNTGKIVVE 180 (183)
T ss_dssp TTHHHHHHHH-----HHTTCCSBEEEEE
T ss_pred HHHHHHHHHH-----HHCCCCCCEEEEE
T ss_conf 9999999999-----9869997449996
No 9
>>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} (A:35-101,A:336-388)
Probab=13.98 E-value=1e+02 Score=14.26 Aligned_cols=18 Identities=11% Similarity=0.560 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHHHH
Q ss_conf 913452899999999875
Q 537021.9.peg.1 1 LESILECQEWLDEFHQYH 18 (62)
Q Consensus 1 ~~~~~~C~~Wf~Efr~YH 18 (62)
++||-||..|+.+++---
T Consensus 26 fdsi~eA~~W~k~m~~ig 43 (120)
T 1noy_A 26 FPSMKDARDWMKRMEDIG 43 (120)
T ss_dssp CSSHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHCCCC
T ss_conf 799899999999716788
No 10
>>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* (A:384-592)
Probab=13.44 E-value=1e+02 Score=14.24 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHCCCE---EECHHHHHHHHHHHHHHHH
Q ss_conf 52899999999875215816---0100016789999999998
Q 537021.9.peg.1 5 LECQEWLDEFHQYHRCEGRV---IKEKDDLICASRYALMMKI 43 (62)
Q Consensus 5 ~~C~~Wf~Efr~YHRkdGKI---Vk~~DDlmsAtRYA~m~~R 43 (62)
+....|.+++..+-+..++. ...+||..+|.-+|+..+.
T Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~~~~~HDD~~Dala~A~~~~~ 197 (209)
T 3cpe_A 156 IHHRATIQEFRTFSEKGVSWAAEEGYHDDLVMSLVIFGWLST 197 (209)
T ss_dssp CCCHHHHHHHTSEEEETTEEEECTTCCCHHHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHHCCCEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 898889999999975398404789998799999999999973
Done!