RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.1078_1 (62 letters) >d1bev1_ b.121.4.1 (1:) Bovine enterovirus coat proteins {Bovine enterovirus, VG-5-27 [TaxId: 12064]} Length = 268 Score = 22.8 bits (49), Expect = 7.3 Identities = 4/27 (14%), Positives = 10/27 (37%) Query: 35 SRYALMMKIFSISKPGYSSWKYTPRKV 61 R +L+ + + W+ R+ Sbjct: 63 GRSSLVGMPLLATGTSITHWRIDFREF 89 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.324 0.138 0.447 Gapped Lambda K H 0.267 0.0663 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 266,200 Number of extensions: 9653 Number of successful extensions: 39 Number of sequences better than 10.0: 1 Number of HSP's gapped: 39 Number of HSP's successfully gapped: 9 Length of query: 62 Length of database: 2,407,596 Length adjustment: 32 Effective length of query: 30 Effective length of database: 1,968,236 Effective search space: 59047080 Effective search space used: 59047080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 47 (22.0 bits)