BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1078_1
         (62 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1078_1 
          Length = 62

 Score =  130 bits (328), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 62/62 (100%), Positives = 62/62 (100%)

Query: 1  LESILECQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRK 60
          LESILECQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRK
Sbjct: 1  LESILECQEWLDEFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRK 60

Query: 61 VI 62
          VI
Sbjct: 61 VI 62


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score = 22.7 bits (47), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 13  EFHQYHRCEGRVIKEKDDLICASRYALMMKIFSISKPGYSSWK 55
           E H     +  V  E  DLI  SRY+  +   ++ K G S+WK
Sbjct: 536 ELHYADNAKLFVPVENIDLI--SRYSTEITTVTLDKLGGSAWK 576


>gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 404

 Score = 20.4 bits (41), Expect = 6.5,   Method: Composition-based stats.
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 11  LDEFHQYHRCEG 22
           L++ +QY RC G
Sbjct: 246 LEQLNQYGRCNG 257


>537021.9.peg.410_1 
          Length = 952

 Score = 20.0 bits (40), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 24 VIKEKDDLICASRYALMMKIFSISKPGYSSWKYTPRKVI 62
          ++K+   L  AS+   + + FS+    + + K+TP+K I
Sbjct: 46 ILKKAQTLQQASQTQCIEERFSLLSSFFLTQKFTPQKNI 84


>gi|254781066|ref|YP_003065479.1| putative lysyl-tRNA synthetase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 355

 Score = 20.0 bits (40), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 7   CQEWLDEFHQYHRCEGRVIKEK 28
           C E LD   Q HR E  + ++K
Sbjct: 275 CDELLDPIEQRHRFEKEMQEKK 296


>gi|254780866|ref|YP_003065279.1| NADH dehydrogenase subunit M [Candidatus Liberibacter asiaticus
          str. psy62]
          Length = 499

 Score = 20.0 bits (40), Expect = 8.2,   Method: Composition-based stats.
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 4  ILECQEWLDEFHQYH 18
          ++E   W+D F  YH
Sbjct: 64 MIEYYHWIDYFCSYH 78


>gi|254780984|ref|YP_003065397.1| hypothetical protein CLIBASIA_04425 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 125

 Score = 19.6 bits (39), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 37 YALMMKIFSISKPGYSS 53
          Y    +I + +KPGYSS
Sbjct: 30 YGSEERIATCAKPGYSS 46


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.324    0.138    0.447 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,287
Number of Sequences: 1233
Number of extensions: 1200
Number of successful extensions: 8
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 62
length of database: 328,796
effective HSP length: 34
effective length of query: 28
effective length of database: 286,874
effective search space:  8032472
effective search space used:  8032472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.1 bits)
S2: 31 (16.5 bits)