HHsearch alignment for GI: peg_1079 and conserved domain: COG4373
>COG4373 Mu-like prophage FluMu protein gp28 [General function prediction only].
Probab=94.71 E-value=0.28 Score=26.20 Aligned_cols=156 Identities=13% Similarity=0.007 Sum_probs=94.6
Q ss_pred CCCCCCHHHHCCCCCCEEEEECCCCHHHHHHHHH---HHCCCCCEEEEEECCCCCCCHHHHHHCC--CCCCCEEEEEEEH
Q ss_conf 7433696550333135899818989749988631---1247587399992489998756556403--6799759999771
Q 537021.9.peg.1 2 KAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLT---RINATQGLVTLTLTPLKGRSPIIEHYLS--ASSSDRQVIRMTI 76 (251)
Q Consensus 2 ~~~~q~~~~~~G~~~~~i~~DE~~~~~~~~~~~~---r~~~~~g~i~~~~nP~~~~~~~~~~~~~--~~~~~~~~~~~t~ 76 (251)
T Consensus 122 ~ALSSnPknlRg~qG-~VviDEaAFHE~ldEllkAA~altmWGa~vRviStHNGvDnlFnQ~iQear~grk~ysvH~iTl 200 (509)
T COG4373 122 TALSSNPKNLRGKQG-KVVIDEAAFHEDLDELLKAAAALTMWGAPVRVISTHNGVDNLFNQMIQEARQGRKKYSVHSITL 200 (509)
T ss_pred EECCCCCCCCCCCCC-CEEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEEH
T ss_conf 660479745546788-4886236656539999998778765177248996268701789999999870255531788865
Q ss_pred HHC--------------C-CCCHH---HHHHHHHCCC-HHHHHHHHCCCCEEECCCEEECC--CCE--------------
Q ss_conf 334--------------6-68899---9999987089-73564330051001014300001--203--------------
Q 537021.9.peg.1 77 NET--------------P-HYNEQ---ERKRIIDSYP-LHEREARTKGEPILGSGRIFPIV--EED-------------- 121 (251)
Q Consensus 77 ~DN--------------p-~l~~~---~~~~~~~~~~-~~~~~~~~~G~~~~~~g~v~~~~--~~~-------------- 121 (251)
T Consensus 201 dDAiadGLy~RIc~v~~~~w~pE~Ea~w~a~l~~~a~t~eda~eEy~C~Pk~s~gAYIphalie~a~~~~vp~l~fe~~~ 280 (509)
T COG4373 201 DDAIADGLYERICNVDRPAWAPEVEAKWLAELRAIAGTDEDAQEEYMCNPKDSTGAYIPHALIEAAVAAEVPDLIFELGS 280 (509)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEECCH
T ss_conf 77777789999982677456756788999988865698144577628775667766466789998875479851797574
Q ss_pred --EECC-------------C------CCCCCCCEEEEEECCCCC-CCCEEEEEEEECCC
Q ss_conf --4315-------------6------546567435752003774-87199999997739
Q 537021.9.peg.1 122 --IVIN-------------S------LDIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDS 158 (251)
Q Consensus 122 --~~~~-------------~------~~~~~~~~~~~g~D~G~~-~p~a~~~~~~~~~~ 158 (251)
T Consensus 281 ~f~~~~~~~r~~~~~~~cl~~l~P~Lqalnp~~r~~fGvDfaR~~DLsv~~v~e~~~dt 339 (509)
T COG4373 281 EFHDIPAWLRESEVLTWCLPDLRPALQALNPGGRLYFGVDFARKRDLSVLWVWEKVGDT 339 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEEEEEECCCH
T ss_conf 55423566424566665344356898732999716521220225673499987445523