Query         537021.9.peg.1079_1
Match_columns 251
No_of_seqs    131 out of 760
Neff          9.0 
Searched_HMMs 13730
Date          Wed May 25 06:37:50 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1079.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d3bzka5 c.55.3.13 (A:325-473)   47.8     7.2 0.00052   16.1   5.0   52  132-185     3-55  (149)
  2 d1rifa_ c.37.1.23 (A:) DNA hel  44.1     8.3  0.0006   15.8   4.0   17   76-92     85-101 (282)
  3 d1yksa1 c.37.1.14 (A:185-324)   43.3     8.5 0.00062   15.7   3.0   10  161-170   101-110 (140)
  4 d1vdma1 c.61.1.1 (A:1-153) Ppr  28.8     9.3 0.00068   15.5   1.1   32  156-187    81-112 (153)
  5 d1a1va1 c.37.1.14 (A:190-325)   21.2      21  0.0015   13.6   4.0   10  161-170    97-106 (136)
  6 d1dkgd1 c.55.1.1 (D:3-185) Hea  20.1      16  0.0012   14.2   1.0   17  204-220   149-165 (183)
  7 d1jcea1 c.55.1.1 (A:4-140) Pro  18.3      25  0.0018   13.2   1.7   10  136-145     2-11  (137)
  8 d1bupa1 c.55.1.1 (A:4-188) Hea  17.8      21  0.0016   13.6   1.2   16  205-220   153-168 (185)
  9 d1z3ix2 c.37.1.19 (X:92-389) R  13.8      33  0.0024   12.6   3.4   30  161-190   195-224 (298)
 10 d1c4oa2 c.37.1.19 (A:410-583)   12.5      36  0.0026   12.4   3.7   35   29-64     20-54  (174)

No 1  
>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}
Probab=47.75  E-value=7.2  Score=16.12  Aligned_cols=52  Identities=13%  Similarity=0.013  Sum_probs=27.7

Q ss_pred             CCEEEEEECCCCCCCCEEEEEEEECCCCEEEEEEEHHHC-CCCHHHHHHHHHHCC
Q ss_conf             743575200377487199999997739989999431025-998799999998332
Q 537021.9.peg.1  132 HWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYRCR-EQTPIFHVAALKSWG  185 (251)
Q Consensus       132 ~~~~~~g~D~G~~~p~a~~~~~~~~~~~~~~i~de~~~~-~~t~~~~~~~i~~~~  185 (251)
                      ...+..|+|.||.+.  +-++++|.+|+.+.-.--|-.. ....+...+.|.++.
T Consensus         3 ~~~~vlg~DPg~r~g--ck~AvlD~~G~vld~~viyp~~~~~~~~~a~~~l~~li   55 (149)
T d3bzka5           3 GPRATLGLDPGLRTG--VKVAVVDATGKLLDTATVYPHAPKNQWDQTLAVLAALC   55 (149)
T ss_dssp             CSCCEEEEECCSTTC--EEEEEECTTSCEEEEEEECCSTTTCCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCC--CEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf             885588878886566--18999979999899999843796779999999999999


No 2  
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=44.10  E-value=8.3  Score=15.80  Aligned_cols=17  Identities=18%  Similarity=0.317  Sum_probs=8.4

Q ss_pred             HHHCCCCCHHHHHHHHH
Q ss_conf             13346688999999987
Q 537021.9.peg.1   76 INETPHYNEQERKRIID   92 (251)
Q Consensus        76 ~~DNp~l~~~~~~~~~~   92 (251)
                      ..++..++.+.+.+...
T Consensus        85 ~~~~~~~~~~~~~~~~~  101 (282)
T d1rifa_          85 INEKEELSRKDFDEWLS  101 (282)
T ss_dssp             GGCCCCCCHHHHHHHHH
T ss_pred             CCCCCCCCCHHCCCCCC
T ss_conf             34564335100102124


No 3  
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=43.30  E-value=8.5  Score=15.73  Aligned_cols=10  Identities=0%  Similarity=0.132  Sum_probs=6.6

Q ss_pred             EEEEEEHHHC
Q ss_conf             9999431025
Q 537021.9.peg.1  161 IYVVKNYRCR  170 (251)
Q Consensus       161 ~~i~de~~~~  170 (251)
                      +.|+||....
T Consensus       101 lvIiDEaH~~  110 (140)
T d1yksa1         101 VIIMDEAHFL  110 (140)
T ss_dssp             EEEETTTTCC
T ss_pred             EEEECCCCCC
T ss_conf             8997543346


No 4  
>d1vdma1 c.61.1.1 (A:1-153) Pprobable purine phosphoribosyltransferase PH0095 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=28.77  E-value=9.3  Score=15.52  Aligned_cols=32  Identities=13%  Similarity=0.110  Sum_probs=27.5

Q ss_pred             CCCCEEEEEEEHHHCCCCHHHHHHHHHHCCCC
Q ss_conf             73998999943102599879999999833248
Q 537021.9.peg.1  156 RDSDVIYVVKNYRCREQTPIFHVAALKSWGKW  187 (251)
Q Consensus       156 ~~~~~~~i~de~~~~~~t~~~~~~~i~~~~~~  187 (251)
                      ..++.+.|+|....+|.|....++.|++.+..
T Consensus        81 ~~gk~VLIVDDii~TG~Tl~~~~~~l~~~g~~  112 (153)
T d1vdma1          81 LKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAK  112 (153)
T ss_dssp             CBTCEEEEEEEEESSCHHHHHHHHHHHTTTBS
T ss_pred             CCCCEEEEEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf             68998999960144687489999877740985


No 5  
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=21.20  E-value=21  Score=13.59  Aligned_cols=10  Identities=10%  Similarity=0.262  Sum_probs=6.6

Q ss_pred             EEEEEEHHHC
Q ss_conf             9999431025
Q 537021.9.peg.1  161 IYVVKNYRCR  170 (251)
Q Consensus       161 ~~i~de~~~~  170 (251)
                      +.|+||....
T Consensus        97 ~vIiDE~H~~  106 (136)
T d1a1va1          97 IIICDECHST  106 (136)
T ss_dssp             EEEEETTTCC
T ss_pred             EEEEECCCCC
T ss_conf             9998255535


No 6  
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Probab=20.13  E-value=16  Score=14.25  Aligned_cols=17  Identities=12%  Similarity=0.122  Sum_probs=10.7

Q ss_pred             CCCHHHHHHHCCCEEEE
Q ss_conf             88889999978974776
Q 537021.9.peg.1  204 GEQLSAQYRRQGMKMLP  220 (251)
Q Consensus       204 ~~s~~e~~r~~G~~~~~  220 (251)
                      ...+.+-.+.+|++...
T Consensus       149 r~~l~~Aa~~AG~~~~~  165 (183)
T d1dkgd1         149 RQATKDAGRIAGLEVKR  165 (183)
T ss_dssp             HHHHHHHHHHTTCEESC
T ss_pred             HHHHHHHHHHCCCCEEE
T ss_conf             99999999986998778


No 7  
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}
Probab=18.30  E-value=25  Score=13.23  Aligned_cols=10  Identities=30%  Similarity=0.368  Sum_probs=7.4

Q ss_pred             EEEECCCCCC
Q ss_conf             7520037748
Q 537021.9.peg.1  136 IGGMDFGWHH  145 (251)
Q Consensus       136 ~~g~D~G~~~  145 (251)
                      .+|+|||.++
T Consensus         2 ~iGIDlGTtn   11 (137)
T d1jcea1           2 DIGIDLGTAN   11 (137)
T ss_dssp             EEEEEECSSE
T ss_pred             EEEEECCHHH
T ss_conf             3899757562


No 8  
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.78  E-value=21  Score=13.56  Aligned_cols=16  Identities=13%  Similarity=0.167  Sum_probs=10.3

Q ss_pred             CCHHHHHHHCCCEEEE
Q ss_conf             8889999978974776
Q 537021.9.peg.1  205 EQLSAQYRRQGMKMLP  220 (251)
Q Consensus       205 ~s~~e~~r~~G~~~~~  220 (251)
                      ..+.+-.+.+|++...
T Consensus       153 ~~~~~Aa~~AGl~~~~  168 (185)
T d1bupa1         153 QATKDAGTIAGLNVLR  168 (185)
T ss_dssp             HHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHCCCCEEE
T ss_conf             9999999986997689


No 9  
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=13.76  E-value=33  Score=12.58  Aligned_cols=30  Identities=10%  Similarity=-0.074  Sum_probs=17.3

Q ss_pred             EEEEEEHHHCCCCHHHHHHHHHHCCCCCEE
Q ss_conf             999943102599879999999833248708
Q 537021.9.peg.1  161 IYVVKNYRCREQTPIFHVAALKSWGKWLPW  190 (251)
Q Consensus       161 ~~i~de~~~~~~t~~~~~~~i~~~~~~~~~  190 (251)
                      +.|+||-..-........+.+........+
T Consensus       195 ~vI~DEaH~ikn~~s~~~~a~~~l~~~~rl  224 (298)
T d1z3ix2         195 LVICDEGHRLKNSDNQTYLALNSMNAQRRV  224 (298)
T ss_dssp             EEEETTGGGCCTTCHHHHHHHHHHCCSEEE
T ss_pred             EEECCCCCCCCCCCCHHHHHHHCCCCCEEE
T ss_conf             541142322013220345644213411256


No 10 
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=12.51  E-value=36  Score=12.37  Aligned_cols=35  Identities=9%  Similarity=0.002  Sum_probs=15.9

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHCCC
Q ss_conf             998863112475873999924899987565564036
Q 537021.9.peg.1   29 VYFEGLTRINATQGLVTLTLTPLKGRSPIIEHYLSA   64 (251)
Q Consensus        29 ~~~~~~~r~~~~~g~i~~~~nP~~~~~~~~~~~~~~   64 (251)
                      +..++..+ ..++.++++.++.......+...+...
T Consensus        20 ll~~i~~~-~~~g~r~lvfc~t~~~~~~l~~~L~~~   54 (174)
T d1c4oa2          20 LMEGIRER-AARGERTLVTVLTVRMAEELTSFLVEH   54 (174)
T ss_dssp             HHHHHHHH-HHTTCEEEEECSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-HHCCCCEEEEECCHHHHHHHHHHHHHC
T ss_conf             99999999-865983899982303799999999865


Done!