RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= 537021.9.peg.1079_1 (251 letters) >2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB: 2wc9_A (A:) Length = 212 Score = 79.6 bits (196), Expect = 4e-16 Identities = 20/158 (12%), Positives = 44/158 (27%), Gaps = 15/158 (9%) Query: 96 LHEREARTKGEPILGSGRIFP-IVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLV 153 R + F + E+ +I ++ G+DFG+ P A Sbjct: 11 SSGLVPRGSHXALGSGVVPFENLQIEEGIITDAEVARFDNIRQGLDFGYGPDPLAFVRWH 70 Query: 154 WNRDSDVIYVVKNYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRR 213 +++ + IY + + + ++ + + D + A Sbjct: 71 YDKRKNRIYAIDELVDHKVSLKRTADFVRKNK------YESARIIADSSEPRSIDALKLE 124 Query: 214 QGMKMLPECATFDDGSNGVEAGISDMLDRMRSGRWKVF 251 G+ + G + VE G + V Sbjct: 125 HGINRIEGA---KKGPDSVEHGE----RWLDELDAIVI 155 >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* (A:384-592) Length = 209 Score = 32.5 bits (73), Expect = 0.066 Identities = 11/152 (7%), Positives = 29/152 (19%), Gaps = 7/152 (4%) Query: 106 EPILGSGRIFPIVEEDIVINSL----DIPEHWVQIGGMDFGWH-HPFAAGHLVWNRDSDV 160 + +E + I +D + + DV Sbjct: 5 LISGMKLAVMDFIEVTPDDHGFHQFKKPEPDRKYIATLDCSEGRGQDYHALHIIDVTDDV 64 Query: 161 IYVVKNYRCREQTPIFHVAALKSWGKWLPWA-WPHDGLQHDKRSGEQLSAQYRRQGMKML 219 V + + + + + + L +G+ Sbjct: 65 WEQVGVLHSNTISHLILPDIVMRYLVEYNECPVYIELNSTGVSVAKSLYMDLEYEGVICD 124 Query: 220 PECA-TFDDGSNGVEAGISDMLDRMRSGRWKV 250 G S + D + + + Sbjct: 125 SYTDLGMKQTKRTKAVGCSTLKDLIEKDKLII 156 >2bvl_A Toxin B; glycosyltransferase; HET: GLC UDP TBR; 2.2A {Clostridium difficile} (A:91-135,A:236-392) Length = 202 Score = 25.8 bits (56), Expect = 6.0 Identities = 3/15 (20%), Positives = 7/15 (46%) Query: 15 TVHYVWFDEEPPEDV 29 +H+VW + + Sbjct: 7 NLHFVWIGGQINDTA 21 >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} (A:) Length = 293 Score = 25.5 bits (55), Expect = 6.6 Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 8/60 (13%) Query: 41 QGLVTLTLTPLKGRSPI--------IEHYLSASSSDRQVIRMTINETPHYNEQERKRIID 92 +G+ + L I I H + D + + E + +E+K I Sbjct: 5 KGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFR 64 >2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1} (A:) Length = 224 Score = 25.4 bits (54), Expect = 7.6 Identities = 9/55 (16%), Positives = 17/55 (30%) Query: 111 SGRIFPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVK 165 G + V + +++ E + G+ V +V VVK Sbjct: 170 EGFHYDKVNHILAKHNVIDLEKEGIASXLSLGYRLRDPKHAQVRKPKEEVXSVVK 224 >2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A (A:71-189) Length = 119 Score = 25.3 bits (55), Expect = 8.3 Identities = 3/34 (8%), Positives = 7/34 (20%) Query: 116 PIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAA 149 V ++ I + + A Sbjct: 2 AFVNNRESSDAKRIEGFTLSEEILKSDKQLSVDA 35 >3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.00A {Bacteroides fragilis nctc 9343} (A:1-70,A:172-403) Length = 302 Score = 25.1 bits (54), Expect = 9.4 Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%) Query: 3 AYEQGRDKW--QSNTVHYVWFDEEPPED 28 E GRD W Y+W+ + P Sbjct: 10 YPETGRDIWIDSVXRQEYLWYRDXPSPA 37 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (B:1772-1800,B:1916-2006) Length = 120 Score = 25.1 bits (55), Expect = 9.8 Identities = 5/21 (23%), Positives = 8/21 (38%), Gaps = 4/21 (19%) Query: 25 PPED----VYFEGLTRINATQ 41 E V++ G+T A Sbjct: 7 SIESLVEVVFYRGMTMQVAVP 27 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.137 0.444 Gapped Lambda K H 0.267 0.0478 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,203,799 Number of extensions: 102080 Number of successful extensions: 262 Number of sequences better than 10.0: 1 Number of HSP's gapped: 261 Number of HSP's successfully gapped: 33 Length of query: 251 Length of database: 4,956,049 Length adjustment: 86 Effective length of query: 165 Effective length of database: 2,048,819 Effective search space: 338055135 Effective search space used: 338055135 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 53 (24.8 bits)