RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.1079_1
         (251 letters)



>2wbn_A G2P, terminase large subunit; large terminase, nuclease, viral
           protein, DNA packaging; 1.90A {Bacillus phage SPP1} PDB:
           2wc9_A
          Length = 212

 Score = 58.6 bits (141), Expect = 1e-09
 Identities = 20/139 (14%), Positives = 43/139 (30%), Gaps = 12/139 (8%)

Query: 109 LGSGRIF--PIVEEDIVINSLDIPEHWVQIGGMDFGW-HHPFAAGHLVWNRDSDVIYVVK 165
           LGSG +    +  E+ +I   ++        G+DFG+   P A     +++  + IY + 
Sbjct: 23  LGSGVVPFENLQIEEGIITDAEVARFDNIRQGLDFGYGPDPLAFVRWHYDKRKNRIYAID 82

Query: 166 NYRCREQTPIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATF 225
                + +       ++                        + A     G+  +      
Sbjct: 83  ELVDHKVSLKRTADFVRKNKYESARIIADSS------EPRSIDALKLEHGINRIEGA--- 133

Query: 226 DDGSNGVEAGISDMLDRMR 244
             G + VE G   + +   
Sbjct: 134 KKGPDSVEHGERWLDELDA 152


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 62/358 (17%), Positives = 100/358 (27%), Gaps = 153/358 (42%)

Query: 2   KAYEQGRD--KWQSNTVHYVWFDEEPPED------VYFE--GLTRINATQGLVT---LTL 48
           K + QG +  +W  N          P +D      +     G+ ++     +VT   L  
Sbjct: 207 KVFTQGLNILEWLENP------SNTPDKDYLLSIPISCPLIGVIQL--AHYVVTAKLLGF 258

Query: 49  TPLKGRSPIIEHYLSASSSDRQ--VIRMTINET---PHYNEQERK----------RIIDS 93
           TP + RS     YL  ++   Q  V  + I ET     +    RK          R  ++
Sbjct: 259 TPGELRS-----YLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEA 313

Query: 94  YP--------LHEREARTKGEP-----ILGSGRIFPIVEEDI-VINSLDIPE--HWVQIG 137
           YP        L +     +G P     I    +    V++ +   NS  +P     V+I 
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ--EQVQDYVNKTNS-HLPAGKQ-VEIS 369

Query: 138 GMDFGWHHPFAAGHLVWNRDSDVIYVVK---------NYRCRE--------QT------- 173
                         LV    +    VV          N   R+        Q+       
Sbjct: 370 --------------LVNGAKN---LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412

Query: 174 ---------PI---FH-------VAALKS--WGKWLPWAWPHDGLQ---HDKRSGEQLSA 209
                    P+   FH          +        + +    D +Q   +D   G  L  
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFN-AKD-IQIPVYDTFDGSDL-- 468

Query: 210 QYRRQGMKMLP-------------ECAT-F------DDGSNGVEAGISDMLDRMRSGR 247
             R     +               E  T F      D G  G  +G+  +  R + G 
Sbjct: 469 --RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA-SGLGVLTHRNKDGT 523



 Score = 29.1 bits (65), Expect = 1.0
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 71   VIRMTINETPHYNEQERKRIIDSYPLHEREARTKGEPILGSGRIFPIVEE 120
            VI   +N T H+  ++ KRI ++Y     E    G+  L + +IF  + E
Sbjct: 1665 VINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGK--LKTEKIFKEINE 1712



 Score = 27.2 bits (60), Expect = 3.4
 Identities = 45/326 (13%), Positives = 82/326 (25%), Gaps = 160/326 (49%)

Query: 1   LKAYEQGRDKWQSNTVHYVWFDEEPPEDVYFEGLTRINATQGLVTLTLTPLKGRSPIIEH 60
           L  +E      + N +H +                   A + L+    T L     +I++
Sbjct: 88  LTEFE--NCYLEGNDIHAL-------------------AAK-LLQENDTTLVKTKELIKN 125

Query: 61  YLSA------------------SSSDRQVIRMTI------NETPHYNEQERKRIIDSYPL 96
           Y++A                  +  +     + I       +   Y E E + +  +Y  
Sbjct: 126 YITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD--YFE-ELRDLYQTYH- 181

Query: 97  HEREARTKGEPILGSGRIFPIVEEDIV------INSL-----DIPEHWVQIGGMDF-GW- 143
                               +V  D++      ++ L     D  + + Q  G++   W 
Sbjct: 182 -------------------VLV-GDLIKFSAETLSELIRTTLDAEKVFTQ--GLNILEWL 219

Query: 144 HHPFAAGHLVWNRDS--DVIYVVK--------------NYR--CR--EQTP-----IF-- 176
            +P           +  D  Y++               +Y    +    TP         
Sbjct: 220 ENP----------SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG 269

Query: 177 ---H---------VAALKSWG----------KWLPWAWPHDGLQHDKRSGEQLSAQYRRQ 214
              H         +A   SW             L +     G+    R     +  Y   
Sbjct: 270 ATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI----GV----RC--YEA--YPNT 317

Query: 215 GMKMLPECATFDDGSNGVEAGISDML 240
               LP     D   N  E   S ML
Sbjct: 318 ---SLPPSILEDSLENN-EGVPSPML 339


>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
           directed evolution; 1.50A {Bacillus subtilis} SCOP:
           c.69.1.1 PDB: 1c7j_A 1c7i_A
          Length = 489

 Score = 31.9 bits (71), Expect = 0.16
 Identities = 9/37 (24%), Positives = 11/37 (29%)

Query: 132 HWVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
            W+  G    G                +VI V  NYR
Sbjct: 101 VWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYR 137


>1p0i_A Cholinesterase; serine hydrolase, butyrate; HET: NAG FUC MES; 2.00A
           {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A* 1p0p_A*
           1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A* 3djy_A*
           3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2j4c_A* 2wig_A* 2wid_A*
           2wil_A*
          Length = 529

 Score = 31.9 bits (71), Expect = 0.16
 Identities = 11/36 (30%), Positives = 12/36 (33%)

Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
           W+  GG   G             R   VI V  NYR
Sbjct: 112 WIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYR 147


>3a58_A Exocyst complex component SEC3; protein complex, PH domain,
          GTPase, membrane traffic, coiled coil, exocytosis,
          phosphoprotein; HET: GNP; 2.60A {Saccharomyces
          cerevisiae}
          Length = 320

 Score = 31.1 bits (70), Expect = 0.23
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 38 NATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIIDS 93
          N +QG V  +  P+ G +   +  +S +S+  Q    T N      E++RK II+ 
Sbjct: 41 NVSQGAVPSSAPPVSGGNYSHKRNVSRASNSSQ----TSNFLAEQYERDRKAIINC 92


>1ea5_A Acetylcholinesterase; hydrolase, serine hydrolase, neurotransmitter
           cleavage, catalytic triad, alpha/beta hydrolase; HET:
           NAG; 1.80A {Torpedo californica} SCOP: c.69.1.1 PDB:
           1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A* 1gpn_A* 1oce_A*
           1qid_A 1qie_A 1qif_A 1qig_A 1qih_A 1qii_A 1qij_A 1qik_A
           1qim_A 1qti_A* 1vot_A* 1vxo_A* 1vxr_A* ...
          Length = 537

 Score = 30.3 bits (67), Expect = 0.43
 Identities = 8/36 (22%), Positives = 12/36 (33%)

Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
           W+  GG   G                +V+ V  +YR
Sbjct: 114 WIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYR 149


>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl
           diphosphate, magnesium, cyclization, lyase; HET: FPF;
           1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A*
           3cke_A*
          Length = 320

 Score = 30.1 bits (67), Expect = 0.52
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 174 PIFHVAALKSWGKWLPWAWPHDGLQHDKRSGEQLSAQYRRQGMKMLPECATFDDGSNGVE 233
           P      +    + L   +  D    +  S E+ SA   +       +     D S  VE
Sbjct: 69  PKALDDRIHFACRLLTVLFLIDD-LLEYMSFEEGSAYNEKLIPISRGDVLP--DRSIPVE 125

Query: 234 AGISDMLDRMR 244
             I D+ + MR
Sbjct: 126 YIIYDLWESMR 136


>1dx4_A Acetylcholinesterase; hydrolase (serine esterase), hydrolase,
           serine esterase, synapse, membrane, nerve, muscle,
           signal; HET: NAG MAN BMA 760; 2.70A {Drosophila
           melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
          Length = 585

 Score = 30.0 bits (66), Expect = 0.59
 Identities = 8/36 (22%), Positives = 11/36 (30%)

Query: 133 WVQIGGMDFGWHHPFAAGHLVWNRDSDVIYVVKNYR 168
           W+  GG   G          +     +VI     YR
Sbjct: 146 WIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYR 181


>1umu_A UMUD'; induced mutagenesis, SOS mutagenesis, DNA repair, beta-
           lactamase cleavage reaction, LEXA repressor, lambda CI;
           2.50A {Escherichia coli} SCOP: b.87.1.1 PDB: 1i4v_A
           1ay9_A
          Length = 116

 Score = 28.0 bits (62), Expect = 1.9
 Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGWHHPFAAGHLVWN---RDSDVIYVVKNYRCRE 171
           FP    D V   +D+ +  +Q     +      A+G  + +    D D++ V        
Sbjct: 2   FPSPAADYVEQRIDLNQLLIQHPSATYFVK---ASGDSMIDGGISDGDLLIVDSAITASH 58

Query: 172 Q 172
            
Sbjct: 59  G 59


>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus
          influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A*
          1f74_A* 1f7b_A*
          Length = 293

 Score = 27.7 bits (61), Expect = 2.7
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 8/60 (13%)

Query: 41 QGLVTLTLTPLK--------GRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERKRIID 92
          +G+ +  L            G   II H +     D   +  +  E    + +E+K I  
Sbjct: 5  KGIFSALLVSFNEDGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFR 64


>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI,
           protein structure initiative, northeast structural
           genomics consortium, NESG; NMR {Escherichia coli} SCOP:
           d.224.1.1
          Length = 155

 Score = 27.1 bits (60), Expect = 3.6
 Identities = 10/40 (25%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 19  VWFDEEPPED--VYFEGLTRINATQGLVTLTLTPLKGRSP 56
           VW      E+  ++F G +     +GL+ + LT ++G++ 
Sbjct: 65  VWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGKTA 104


>2rkv_A Trichothecene 3-O-acetyltransferase; BAHD superfamily,
           deoxynivalenol, acetyl COA, fusarium; HET: COA MPO ZBA;
           1.60A {Gibberella zeae} PDB: 3b2s_A* 3b30_A* 2rkt_A*
           2zba_A*
          Length = 451

 Score = 27.1 bits (59), Expect = 4.2
 Identities = 8/38 (21%), Positives = 11/38 (28%)

Query: 144 HHPFAAGHLVWNRDSDVIYVVKNYRCREQTPIFHVAAL 181
             P+ AG +     S+           E  P   V  L
Sbjct: 52  AVPWVAGQVKAEGISEGNTGTSFIVPFEDVPRVVVKDL 89


>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural
           genomics, PSI-2, protein structure initiative; HET: FMN;
           2.30A {Streptococcus mutans UA159} SCOP: d.90.1.1
          Length = 208

 Score = 26.3 bits (57), Expect = 6.2
 Identities = 6/24 (25%), Positives = 10/24 (41%)

Query: 120 EDIVINSLDIPEHWVQIGGMDFGW 143
           +  V    D+P +W     + FG 
Sbjct: 155 DAQVAEKYDLPTNWKMRAQIPFGS 178


>2wqf_A Copper induced nitroreductase D; COPR regulated protein,
           oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
          Length = 202

 Score = 26.3 bits (57), Expect = 6.3
 Identities = 7/29 (24%), Positives = 14/29 (48%)

Query: 115 FPIVEEDIVINSLDIPEHWVQIGGMDFGW 143
           +  + ++ V    ++PE W   G + FG 
Sbjct: 153 YNPLIDEAVAKEWNLPESWKLRGQLVFGS 181


>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
          transport, transport signal sequence, cytoplasm,
          endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
          2nup_B 3egd_B 3egx_B
          Length = 751

 Score = 26.2 bits (57), Expect = 7.8
 Identities = 14/57 (24%), Positives = 20/57 (35%)

Query: 32 EGLTRINATQGLVTLTLTPLKGRSPIIEHYLSASSSDRQVIRMTINETPHYNEQERK 88
          E L  +N TQ    L +TP+    P +   L   +      R T+   P       K
Sbjct: 3  ESLRPVNLTQERNILPMTPVWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNK 59


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.137    0.444 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,446,461
Number of extensions: 114695
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 309
Number of HSP's successfully gapped: 26
Length of query: 251
Length of database: 5,693,230
Length adjustment: 90
Effective length of query: 161
Effective length of database: 3,511,270
Effective search space: 565314470
Effective search space used: 565314470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.3 bits)