Query 537021.9.peg.1080_1
Match_columns 110
No_of_seqs 50 out of 52
Neff 3.6
Searched_HMMs 23785
Date Wed May 25 06:43:18 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1080.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cpe_A Terminase, DNA packagin 67.7 5.9 0.00025 20.0 4.2 46 1-57 184-229 (592)
2 1swg_A Circularly permuted cor 67.0 0.24 1E-05 28.2 -3.1 31 14-44 1-47 (128)
3 2o0j_A Terminase, DNA packagin 44.6 19 0.00078 17.1 4.3 47 1-58 184-230 (385)
4 1kjw_A Postsynaptic density pr 36.3 9.3 0.00039 18.9 0.9 10 25-34 39-48 (295)
5 1t3l_A Dihydropyridine-sensiti 32.5 9.5 0.0004 18.8 0.5 11 24-34 77-87 (337)
6 1t0h_A Voltage-gated calcium c 27.3 13 0.00054 18.0 0.4 12 24-35 87-98 (132)
7 2ebv_A Nuclear pore complex pr 15.7 15 0.00064 17.6 -1.2 17 29-45 21-37 (57)
8 2gfu_A DNA mismatch repair pro 13.7 43 0.0018 15.0 0.7 15 22-37 34-48 (134)
9 2pz1_A RHO guanine nucleotide 13.4 74 0.0031 13.6 1.8 19 24-44 62-80 (466)
10 3lh5_A Tight junction protein 13.3 64 0.0027 14.0 1.5 13 25-37 39-51 (251)
No 1
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=67.71 E-value=5.9 Score=20.02 Aligned_cols=46 Identities=20% Similarity=0.079 Sum_probs=36.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHH
Q ss_conf 952102124788999999863899850175455577279994145325787656665
Q 537021.9.peg.1 1 MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLL 57 (110)
Q Consensus 1 mAgNr~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~L 57 (110)
+++-|+|||.+.++++..++. |....+.+..+.+.++.|+++.+.-
T Consensus 184 lk~RQ~GKSt~~a~~~l~~al-----------~~~~~~i~ivA~~~~~A~~i~~~ik 229 (592)
T 3cpe_A 184 NLSRQLGKTTVVAIFLAHFVC-----------FNKDKAVGILAHKGSMSAEVLDRTK 229 (592)
T ss_dssp EECSSSCHHHHHHHHHHHHHH-----------TSSSCEEEEEESSHHHHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHH-----------HCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 946988699999999999998-----------2999759999198999999999999
No 2
>1swg_A Circularly permuted core-streptavidin E51/A46; biotin binding protein, circular permutation, signal, biotin, biotin-binding protein; HET: BTN; 1.80A {Streptomyces avidinii} SCOP: b.61.1.1 PDB: 1swf_A*
Probab=66.97 E-value=0.24 Score=28.18 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=24.0
Q ss_pred HHHHHHHHCCCCCC---------------CC-CEEECCCCEEEEECC
Q ss_conf 99999863899850---------------17-545557727999414
Q 537021.9.peg.1 14 AEAAMHLSGCYPSW---------------WR-GYRFLQPIVMVAGSV 44 (110)
Q Consensus 14 ~E~A~HlTG~YP~W---------------W~-G~RF~~Pi~aWa~g~ 44 (110)
+|--|||||||--| |+ |.+|.+....|.|--
T Consensus 1 ~e~~y~ltGry~~~p~~~G~g~TFGFtV~W~ng~~~~~StTsWtGQC 47 (128)
T 1swg_A 1 MESRYVLTGRYDSAPATDGSGTALGWTVAWKNNYRNAHSATTWSGQY 47 (128)
T ss_dssp --CEEEEEEEECSSCCSSSCCEEEEEEEEEECSSCEEEEEEEEEEEE
T ss_pred CCCEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCEEEEEEEE
T ss_conf 98435432040335887899763799999527854453041677887
No 3
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=44.63 E-value=19 Score=17.10 Aligned_cols=47 Identities=19% Similarity=0.066 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 9521021247889999998638998501754555772799941453257876566650
Q 537021.9.peg.1 1 MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLLL 58 (110)
Q Consensus 1 mAgNr~GKT~~ga~E~A~HlTG~YP~WW~G~RF~~Pi~aWa~g~t~E~tRDivQ~~Ll 58 (110)
+++-|+|||.+.++++..++. |.+....++...+.++.+.+..+...
T Consensus 184 lKsRQ~GKTT~~a~~~L~~Al-----------f~~~~~i~IiA~k~~~A~~i~~~ik~ 230 (385)
T 2o0j_A 184 NLSRQLGKTTVVAIFLAHFVC-----------FNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp EECSSSCHHHHHHHHHHHHHH-----------SSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHH-----------HCCCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 962668720879999999997-----------26677148861537889999999999
No 4
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=36.33 E-value=9.3 Score=18.86 Aligned_cols=10 Identities=30% Similarity=1.039 Sum_probs=6.2
Q ss_pred CCCCCCEEEC
Q ss_conf 8501754555
Q 537021.9.peg.1 25 PSWWRGYRFL 34 (110)
Q Consensus 25 P~WW~G~RF~ 34 (110)
|+||+++|-+
T Consensus 39 ~~wWqa~~~~ 48 (295)
T 1kjw_A 39 EEWWQARRVH 48 (295)
T ss_dssp SSEEEEEECC
T ss_pred CCCEEEEECC
T ss_conf 9807999738
No 5
>1t3l_A Dihydropyridine-sensitive L-type, calcium channel beta-2 subunit; protein-peptide complex, SH3 domain, guanylate kinase domain; 2.20A {Oryctolagus cuniculus} SCOP: b.34.2.1 c.37.1.1 PDB: 1t3s_A 1vyv_A 1vyu_A 1vyt_A
Probab=32.47 E-value=9.5 Score=18.81 Aligned_cols=11 Identities=27% Similarity=0.752 Sum_probs=7.0
Q ss_pred CCCCCCCEEEC
Q ss_conf 98501754555
Q 537021.9.peg.1 24 YPSWWRGYRFL 34 (110)
Q Consensus 24 YP~WW~G~RF~ 34 (110)
+|+|||+|+..
T Consensus 77 D~~WWqar~~~ 87 (337)
T 1t3l_A 77 NNDWWIGRLVK 87 (337)
T ss_dssp SSSEEEEEESS
T ss_pred CCCHHHEEECC
T ss_conf 83045323337
No 6
>1t0h_A Voltage-gated calcium channel subunit BETA2A; SH3 domain, nucleotide kinase like domain, signaling protein; 1.97A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1t0j_A
Probab=27.32 E-value=13 Score=18.02 Aligned_cols=12 Identities=25% Similarity=0.736 Sum_probs=8.3
Q ss_pred CCCCCCCEEECC
Q ss_conf 985017545557
Q 537021.9.peg.1 24 YPSWWRGYRFLQ 35 (110)
Q Consensus 24 YP~WW~G~RF~~ 35 (110)
-++||+|+....
T Consensus 87 d~~WW~gr~~~~ 98 (132)
T 1t0h_A 87 NNDWWIGRLVKE 98 (132)
T ss_dssp SSSEEEEEESST
T ss_pred CCCCEEEEECCC
T ss_conf 888379998168
No 7
>2ebv_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.72 E-value=15 Score=17.59 Aligned_cols=17 Identities=35% Similarity=0.337 Sum_probs=13.5
Q ss_pred CCEEECCCCEEEEECCC
Q ss_conf 75455577279994145
Q 537021.9.peg.1 29 RGYRFLQPIVMVAGSVT 45 (110)
Q Consensus 29 ~G~RF~~Pi~aWa~g~t 45 (110)
-|-+|.|||--|-.++-
T Consensus 21 fgdkfkrpigswecsvc 37 (57)
T 2ebv_A 21 FGDKFKRPIGSWECSVC 37 (57)
T ss_dssp CCSCCCCCSSSCCCSSS
T ss_pred CCCCCCCCCCCEEEEEE
T ss_conf 65001575575377789
No 8
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=13.71 E-value=43 Score=14.95 Aligned_cols=15 Identities=33% Similarity=1.119 Sum_probs=11.2
Q ss_pred CCCCCCCCCEEECCCC
Q ss_conf 8998501754555772
Q 537021.9.peg.1 22 GCYPSWWRGYRFLQPI 37 (110)
Q Consensus 22 G~YP~WW~G~RF~~Pi 37 (110)
+.|| ||-|+..+.|.
T Consensus 34 ~gyP-wWPa~I~~~~~ 48 (134)
T 2gfu_A 34 EGYP-WWPSLVYNHPF 48 (134)
T ss_dssp TTSC-CEEEECCCCSS
T ss_pred CCCC-CCCEEECCCCC
T ss_conf 7968-98756527420
No 9
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protein; 2.25A {Homo sapiens} PDB: 2dx1_A
Probab=13.37 E-value=74 Score=13.59 Aligned_cols=19 Identities=16% Similarity=0.183 Sum_probs=13.1
Q ss_pred CCCCCCCEEECCCCEEEEECC
Q ss_conf 985017545557727999414
Q 537021.9.peg.1 24 YPSWWRGYRFLQPIVMVAGSV 44 (110)
Q Consensus 24 YP~WW~G~RF~~Pi~aWa~g~ 44 (110)
.|+||.|+. .+...|.-+.
T Consensus 62 ~~~wW~g~~--~~~~GwfPsn 80 (466)
T 2pz1_A 62 NREWWWGRV--ADGEGWFPAS 80 (466)
T ss_dssp SSSEEEEEE--TTEEEEEEGG
T ss_pred CCCEEEEEE--CCCEEECCHH
T ss_conf 798589998--9900131545
No 10
>3lh5_A Tight junction protein ZO-1; SH3-guanylate kinase, intramolecular fold, alternative splicing, cell junction, cell membrane, membrane, phosphoprotein; 2.60A {Homo sapiens}
Probab=13.30 E-value=64 Score=13.96 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=9.1
Q ss_pred CCCCCCEEECCCC
Q ss_conf 8501754555772
Q 537021.9.peg.1 25 PSWWRGYRFLQPI 37 (110)
Q Consensus 25 P~WW~G~RF~~Pi 37 (110)
++||+++|-+...
T Consensus 39 ~~wW~a~~v~~~~ 51 (251)
T 3lh5_A 39 LGSWLAIRIGKNH 51 (251)
T ss_dssp TSEEEEEEECGGG
T ss_pred CCCEEEEEECCCC
T ss_conf 6746899978998
Done!