RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= 537021.9.peg.1080_1
         (110 letters)



>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase;
           HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
           (A:1-228,A:365-492)
          Length = 356

 Score = 25.8 bits (55), Expect = 2.5
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 16  AAMHLSGCYPSWWRGYRFLQP----IVMVAGSVTYELTRDGIQRLLLGEPMSPDQQGSGM 71
           AA H +G        +    P      M+  +   + TR  I+     +  +P   G+G 
Sbjct: 292 AAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNNKAATPLDMGAGH 351

Query: 72  IPANK 76
           +  N+
Sbjct: 352 VDPNR 356


>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone,
           convertase, subtilisin like protease, serine protease,
           hydrolase; HET: LYM NDG; 1.90A {Saccharomyces
           cerevisiae} (A:1-347)
          Length = 347

 Score = 24.3 bits (50), Expect = 5.6
 Identities = 11/42 (26%), Positives = 17/42 (40%)

Query: 39  MVAGSVTYELTRDGIQRLLLGEPMSPDQQGSGMIPANKVLNM 80
            +  +V  E   DG  R          + G G I A+K++ M
Sbjct: 301 SILSAVGLEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEM 342


>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP;
           2.20A {Escherichia coli} (A:1-121,A:185-308)
          Length = 245

 Score = 24.1 bits (52), Expect = 6.7
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 40  VAGSVTYELTRDGIQRLL-LGEPMSPDQQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHL 98
           +  SV   L+ D I RL  + E +S ++     +P +++LN    SN+            
Sbjct: 15  LRDSVPMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGT 74

Query: 99  SGRDIGFII 107
           +G+ I +II
Sbjct: 75  NGQRIPYII 83


>1wlt_A 176AA long hypothetical DTDP-4-dehydrorhamnose 3,
           5-epimerase; jelly roll-like topology, flattened barrel,
           isomerase; 1.90A {Sulfolobus tokodaii} (A:)
          Length = 196

 Score = 23.7 bits (51), Expect = 8.6
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 2/52 (3%)

Query: 58  LGEPMSPDQQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRDIGFIIES 109
           +G         SG++P    +     +   G            R  GF +E 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMPFEFENLGMGIILIKPKVFPDKR--GFFLEV 50


>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78,
           invertase; 1.90A {Bacillus SP} (A:196-217,A:405-533)
          Length = 151

 Score = 23.7 bits (51), Expect = 9.8
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 3/38 (7%)

Query: 25  PSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLLLGEPM 62
               RG+R+L   V    +    +    I       P+
Sbjct: 117 SPVRRGFRYLFLTVRGNSA---PVKLHEIYIRQSTYPV 151


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0416    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 842,428
Number of extensions: 32451
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 10
Length of query: 110
Length of database: 4,956,049
Length adjustment: 65
Effective length of query: 45
Effective length of database: 2,758,724
Effective search space: 124142580
Effective search space used: 124142580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)