RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= 537021.9.peg.1080_1 (110 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.7 bits (69), Expect = 0.081 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 34/92 (36%) Query: 31 YR-FLQPIVMVAGSVTYELTRD----------G---IQRL-----------LLGEPMS-P 64 Y + ++ + EL R G ++ L LL P+S P Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239 Query: 65 ----DQQGSGMIPANKVLNMTR---RSNIAGA 89 Q ++ A K+L T RS + GA Sbjct: 240 LIGVIQLAHYVVTA-KLLGFTPGELRSYLKGA 270 Score = 23.7 bits (51), Expect = 10.0 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 34/89 (38%) Query: 34 LQPIVMVAGSVTYELT------------RDGIQRLLLGEPMSPDQQGSGMIPANKVLNMT 81 +P+ + GS+ + L ++ ++L P P + Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKIL---P-EPTE--------------- 46 Query: 82 RRSNIAGAYSTVTVRHLSGRDIGFIIESI 110 A T L G+ +G++ + Sbjct: 47 ---GFAADDEPTTPAELVGKFLGYVSSLV 72 >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 Score = 26.1 bits (56), Expect = 2.2 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 5/79 (6%) Query: 9 TLAGAAEAAMHLSGCYPSWWRGYRFLQP-----IVMVAGSVTYELTRDGIQRLLLGEPMS 63 L+G + +A ++G + Y P + + + S Sbjct: 402 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFS 461 Query: 64 PDQQGSGMIPANKVLNMTR 82 P QQG+G + A K T Sbjct: 462 PRQQGAGAVDAKKASAATM 480 >1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP: c.1.8.5 Length = 290 Score = 24.3 bits (52), Expect = 7.6 Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 4/40 (10%) Query: 55 RLLLGEPMSPDQQGSGMIPANKVLN----MTRRSNIAGAY 90 ++L G P I + + + + ++ G + Sbjct: 220 KVLPGFSTDPLDTKHNKITRDIFIGGCTRLVQTFSLPGVF 259 >1o4t_A Putative oxalate decarboxylase; TM1287, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.95A {Thermotoga maritima} SCOP: b.82.1.9 Length = 133 Score = 23.8 bits (51), Expect = 9.4 Identities = 10/36 (27%), Positives = 19/36 (52%) Query: 67 QGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRD 102 +G+GM+ + + R SN+ G V + HL ++ Sbjct: 15 EGTGMVVRSSEITPERISNMRGGKGEVEMAHLLSKE 50 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.320 0.135 0.407 Gapped Lambda K H 0.267 0.0417 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 947,001 Number of extensions: 37443 Number of successful extensions: 77 Number of sequences better than 10.0: 1 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 10 Length of query: 110 Length of database: 5,693,230 Length adjustment: 74 Effective length of query: 36 Effective length of database: 3,899,174 Effective search space: 140370264 Effective search space used: 140370264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.8 bits)