RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= 537021.9.peg.1080_1
         (110 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.7 bits (69), Expect = 0.081
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 34/92 (36%)

Query: 31  YR-FLQPIVMVAGSVTYELTRD----------G---IQRL-----------LLGEPMS-P 64
           Y   +  ++  +     EL R           G   ++ L           LL  P+S P
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239

Query: 65  ----DQQGSGMIPANKVLNMTR---RSNIAGA 89
                Q    ++ A K+L  T    RS + GA
Sbjct: 240 LIGVIQLAHYVVTA-KLLGFTPGELRSYLKGA 270



 Score = 23.7 bits (51), Expect = 10.0
 Identities = 12/89 (13%), Positives = 27/89 (30%), Gaps = 34/89 (38%)

Query: 34  LQPIVMVAGSVTYELT------------RDGIQRLLLGEPMSPDQQGSGMIPANKVLNMT 81
            +P+ +  GS+ + L             ++   ++L   P  P +               
Sbjct: 6   TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKIL---P-EPTE--------------- 46

Query: 82  RRSNIAGAYSTVTVRHLSGRDIGFIIESI 110
                A      T   L G+ +G++   +
Sbjct: 47  ---GFAADDEPTTPAELVGKFLGYVSSLV 72


>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
           pyogenes} PDB: 3eif_A*
          Length = 926

 Score = 26.1 bits (56), Expect = 2.2
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 5/79 (6%)

Query: 9   TLAGAAEAAMHLSGCYPSWWRGYRFLQP-----IVMVAGSVTYELTRDGIQRLLLGEPMS 63
            L+G + +A  ++G      + Y    P       +         +   +         S
Sbjct: 402 KLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFS 461

Query: 64  PDQQGSGMIPANKVLNMTR 82
           P QQG+G + A K    T 
Sbjct: 462 PRQQGAGAVDAKKASAATM 480


>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
           c.1.8.5
          Length = 290

 Score = 24.3 bits (52), Expect = 7.6
 Identities = 5/40 (12%), Positives = 14/40 (35%), Gaps = 4/40 (10%)

Query: 55  RLLLGEPMSPDQQGSGMIPANKVLN----MTRRSNIAGAY 90
           ++L G    P       I  +  +     + +  ++ G +
Sbjct: 220 KVLPGFSTDPLDTKHNKITRDIFIGGCTRLVQTFSLPGVF 259


>1o4t_A Putative oxalate decarboxylase; TM1287, structural genomics, JCSG,
           PSI, protein structure initiative, joint center for
           structural genomics; 1.95A {Thermotoga maritima} SCOP:
           b.82.1.9
          Length = 133

 Score = 23.8 bits (51), Expect = 9.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 67  QGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRD 102
           +G+GM+  +  +   R SN+ G    V + HL  ++
Sbjct: 15  EGTGMVVRSSEITPERISNMRGGKGEVEMAHLLSKE 50


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.320    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0417    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 947,001
Number of extensions: 37443
Number of successful extensions: 77
Number of sequences better than 10.0: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 10
Length of query: 110
Length of database: 5,693,230
Length adjustment: 74
Effective length of query: 36
Effective length of database: 3,899,174
Effective search space: 140370264
Effective search space used: 140370264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.8 bits)