BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1080_1
         (110 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1080_1 
          Length = 110

 Score =  228 bits (581), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 110/110 (100%), Positives = 110/110 (100%)

Query: 1   MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLLLGE 60
           MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLLLGE
Sbjct: 1   MAGNQLGKTLAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQRLLLGE 60

Query: 61  PMSPDQQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRDIGFIIESI 110
           PMSPDQQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRDIGFIIESI
Sbjct: 61  PMSPDQQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGRDIGFIIESI 110


>gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 24.3 bits (51), Expect = 0.58,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 2/30 (6%)

Query: 2   AGNQLGKTLAGAAEAAMHLSGCYPSW--WR 29
           +G ++GKTL+GA      ++  Y  W  WR
Sbjct: 233 SGTKMGKTLSGAIWLNKEMTSPYNFWQYWR 262


>gi|254781044|ref|YP_003065457.1| succinate dehydrogenase iron-sulfur subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 259

 Score = 22.7 bits (47), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 10  LAGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQ 54
           L      A   + C   WW   R+L P +++        +RD  Q
Sbjct: 167 LYECVMCACCSTSCPSYWWNSDRYLGPAILLQAYRWLIDSRDEFQ 211


>gi|254781118|ref|YP_003065531.1| lysyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 502

 Score = 22.3 bits (46), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 52  GIQRLLLGEPMSPDQQGSGMIPANKVLNMTRRS 84
           GI RL++    +P  +   + PA +V N +R++
Sbjct: 469 GIDRLIMLLTNAPSIRDVILFPAQRVKNGSRKT 501


>gi|254780673|ref|YP_003065086.1| pyruvate dehydrogenase subunit beta [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 467

 Score = 22.3 bits (46), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 1   MAGNQLGKTL------AGAAEAAMHLSGCYPSWWRGYRFLQPIVMVAGSVTYELTRDGIQ 54
           M+G Q+  ++        AA  A   S CY +W+     L+ ++    S    L +  I+
Sbjct: 240 MSGGQITTSIVFRGPNGAAARVAAQHSQCYAAWYSHVPGLKVVIPYTASDAKGLLKAAIR 299


>gi|255764470|ref|YP_003064828.2| integral membrane protein TerC [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 523

 Score = 21.9 bits (45), Expect = 3.2,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 49  TRDGIQRLLLGEPMSP 64
           T D + RLL G+P+ P
Sbjct: 252 TADAVLRLLGGKPIQP 267


>537021.9.peg.410_1 
          Length = 952

 Score = 21.2 bits (43), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 61  PMSPDQQGSGMIPANKVLNMTRRSNIAGAYSTVTVRHLSGR 101
           P+S       +   +KV ++   +      ST T+RH S R
Sbjct: 261 PLSFRSTADILTVVDKVFSIPENAQGLSEDSTTTIRHRSSR 301


>gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 520

 Score = 20.8 bits (42), Expect = 6.3,   Method: Composition-based stats.
 Identities = 7/24 (29%), Positives = 12/24 (50%)

Query: 18  MHLSGCYPSWWRGYRFLQPIVMVA 41
           +H +G Y   W+ +  L P+  V 
Sbjct: 430 IHKAGIYRKIWQAFTVLLPVQTVG 453


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.320    0.135    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,155
Number of Sequences: 1233
Number of extensions: 2092
Number of successful extensions: 10
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 110
length of database: 328,796
effective HSP length: 63
effective length of query: 47
effective length of database: 251,117
effective search space: 11802499
effective search space used: 11802499
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 32 (16.9 bits)