Query         537021.9.peg.1083_1
Match_columns 40
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Wed May 25 06:22:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1083.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 pfam02992 Transposase_21 Trans  25.9      10 0.00026   19.8  -1.4   29    1-29     79-107 (226)
  2 COG1889 NOP1 Fibrillarin-like   18.5      24 0.00062   17.9  -0.7   18   13-30    150-167 (231)
  3 KOG0037 consensus               17.0 1.1E+02  0.0028   14.7   2.4   33    7-39    161-196 (221)
  4 KOG2350 consensus               14.5      76  0.0019   15.5   1.0   20    1-23    149-168 (221)
  5 pfam00292 PAX 'Paired box' dom  14.3 1.1E+02  0.0027   14.7   1.7   24   10-35     20-43  (125)
  6 pfam06637 PV-1 PV-1 protein (P  11.7 1.1E+02  0.0028   14.7   1.1   28    1-28     25-52  (442)
  7 pfam04017 DUF366 Domain of unk  11.6      50  0.0013   16.4  -0.6   17   17-33     28-44  (183)
  8 COG2029 Uncharacterized conser  11.5      54  0.0014   16.2  -0.5   16   17-32     31-46  (189)
  9 PRK05841 flgE flagellar hook p  10.5 1.5E+02  0.0039   13.9   1.6   19    3-21    569-587 (605)
 10 COG1347 NqrD Na+-transporting   10.4 1.6E+02   0.004   13.9   1.6   12    3-14     54-65  (208)

No 1  
>pfam02992 Transposase_21 Transposase family tnp2.
Probab=25.87  E-value=10  Score=19.84  Aligned_cols=29  Identities=41%  Similarity=0.589  Sum_probs=24.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCHHHHCHH
Q ss_conf             91899999999999750110310001864
Q 537021.9.peg.1    1 MKLYNFFVSLIVRQRVSQKNQIDVFKNPC   29 (40)
Q Consensus         1 mklynffvslivrqrvsqknqidvfknpc   29 (40)
                      ||--++|.|+++--.-.-.|.||||-.|-
T Consensus        79 mk~~~~~lsllIpGP~~Pg~diDVyl~PL  107 (226)
T pfam02992        79 MKRENIFLSLLIPGPKQPGNDIDVFLQPL  107 (226)
T ss_pred             HHHHHHHEEEECCCCCCCCCCCCHHHHHH
T ss_conf             31344320241337888886632367889


No 2  
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=18.46  E-value=24  Score=17.95  Aligned_cols=18  Identities=28%  Similarity=0.460  Sum_probs=13.9

Q ss_pred             HHHHHHHHCCHHHHCHHH
Q ss_conf             997501103100018645
Q 537021.9.peg.1   13 RQRVSQKNQIDVFKNPCD   30 (40)
Q Consensus        13 rqrvsqknqidvfknpcd   30 (40)
                      -|-|+|.||+++++.-.+
T Consensus       150 y~DVAQp~Qa~I~~~Na~  167 (231)
T COG1889         150 YQDVAQPNQAEILADNAE  167 (231)
T ss_pred             EEECCCCHHHHHHHHHHH
T ss_conf             983688107899998899


No 3  
>KOG0037 consensus
Probab=16.96  E-value=1.1e+02  Score=14.67  Aligned_cols=33  Identities=36%  Similarity=0.559  Sum_probs=25.9

Q ss_pred             HHHHHHHHHH---HHHHCCHHHHCHHHHHHHHHHHC
Q ss_conf             9999999975---01103100018645788888740
Q 537021.9.peg.1    7 FVSLIVRQRV---SQKNQIDVFKNPCDVSKKLTEVF   39 (40)
Q Consensus         7 fvslivrqrv---sqknqidvfknpcdvskkltevf   39 (40)
                      |..+|||+--   +-....|-|-+-|-+...||+.|
T Consensus       161 ~~~~lv~kyd~~~~g~i~FD~FI~ccv~L~~lt~~F  196 (221)
T KOG0037         161 FYNLLVRKYDRFGGGRIDFDDFIQCCVVLQRLTEAF  196 (221)
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             999999986604688400999999999999999999


No 4  
>KOG2350 consensus
Probab=14.48  E-value=76  Score=15.47  Aligned_cols=20  Identities=50%  Similarity=0.728  Sum_probs=15.9

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             91899999999999750110310
Q 537021.9.peg.1    1 MKLYNFFVSLIVRQRVSQKNQID   23 (40)
Q Consensus         1 mklynffvslivrqrvsqknqid   23 (40)
                      |||+|-||-   .|||-..++|.
T Consensus       149 mkLWNsfVr---kqrviAD~hip  168 (221)
T KOG2350         149 MKLWNSFVR---KQRVIADGHIP  168 (221)
T ss_pred             HHHHHHHHH---HHHEECCCCCC
T ss_conf             999999988---74301168784


No 5  
>pfam00292 PAX 'Paired box' domain.
Probab=14.32  E-value=1.1e+02  Score=14.73  Aligned_cols=24  Identities=33%  Similarity=0.693  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHCCHHHHCHHHHHHHH
Q ss_conf             99999750110310001864578888
Q 537021.9.peg.1   10 LIVRQRVSQKNQIDVFKNPCDVSKKL   35 (40)
Q Consensus        10 livrqrvsqknqidvfknpcdvskkl   35 (40)
                      .-+||+.-+-.+-.+  -|||.|+.|
T Consensus        20 ~~~R~kIVeLa~~G~--RpCdISR~L   43 (125)
T pfam00292        20 NHIRQKIVELAHSGV--RPCDISRQL   43 (125)
T ss_pred             HHHHHHHHHHHHCCC--CHHHHHHHH
T ss_conf             889999999998499--788887762


No 6  
>pfam06637 PV-1 PV-1 protein (PLVAP). This family consists of several PV-1 (PLVAP) proteins which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms. The function of this family is unknown.
Probab=11.71  E-value=1.1e+02  Score=14.68  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHCCHHHHCH
Q ss_conf             9189999999999975011031000186
Q 537021.9.peg.1    1 MKLYNFFVSLIVRQRVSQKNQIDVFKNP   28 (40)
Q Consensus         1 mklynffvslivrqrvsqknqidvfknp   28 (40)
                      |+.+-||||||----.-.---.-|+.||
T Consensus        25 LryfFlFvSLIQfLIIlgLVLFmVYGnv   52 (442)
T pfam06637        25 LRYFFLFVSLIQFLIILGLVLFMIYGNV   52 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             9999999999999999999999640774


No 7  
>pfam04017 DUF366 Domain of unknown function (DUF366). Archaeal domain of unknown function.
Probab=11.58  E-value=50  Score=16.37  Aligned_cols=17  Identities=47%  Similarity=0.823  Sum_probs=13.8

Q ss_pred             HHHHCCHHHHCHHHHHH
Q ss_conf             01103100018645788
Q 537021.9.peg.1   17 SQKNQIDVFKNPCDVSK   33 (40)
Q Consensus        17 sqknqidvfknpcdvsk   33 (40)
                      -|+..|-+|..||+|+-
T Consensus        28 ~~~dsIV~Frgp~~V~~   44 (183)
T pfam04017        28 IQGDSIVVFRGPCDVKI   44 (183)
T ss_pred             CCCCCEEEEECCCCCCH
T ss_conf             67685899966615168


No 8  
>COG2029 Uncharacterized conserved protein [Function unknown]
Probab=11.46  E-value=54  Score=16.21  Aligned_cols=16  Identities=38%  Similarity=0.636  Sum_probs=13.0

Q ss_pred             HHHHCCHHHHCHHHHH
Q ss_conf             0110310001864578
Q 537021.9.peg.1   17 SQKNQIDVFKNPCDVS   32 (40)
Q Consensus        17 sqknqidvfknpcdvs   32 (40)
                      -|+..|-||..||||.
T Consensus        31 I~gdSiVvfrG~mdVk   46 (189)
T COG2029          31 IKGDSIVVFRGPMDVK   46 (189)
T ss_pred             CCCCEEEEEECCCCCC
T ss_conf             6776289996453211


No 9  
>PRK05841 flgE flagellar hook protein FlgE; Validated
Probab=10.54  E-value=1.5e+02  Score=13.94  Aligned_cols=19  Identities=32%  Similarity=0.210  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHHHHHHHC
Q ss_conf             8999999999997501103
Q 537021.9.peg.1    3 LYNFFVSLIVRQRVSQKNQ   21 (40)
Q Consensus         3 lynffvslivrqrvsqknq   21 (40)
                      |-.=|+.||+-||--|-|-
T Consensus       569 La~Eft~mIvtQR~yQANs  587 (605)
T PRK05841        569 AGNALTNLILMQRGYSMNA  587 (605)
T ss_pred             HHHHHHHHHHHHHHCHHHC
T ss_conf             8999999999876520541


No 10 
>COG1347 NqrD Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD [Energy production and conversion]
Probab=10.44  E-value=1.6e+02  Score=13.87  Aligned_cols=12  Identities=50%  Similarity=0.700  Sum_probs=9.0

Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999999999
Q 537021.9.peg.1    3 LYNFFVSLIVRQ   14 (40)
Q Consensus         3 lynffvslivrq   14 (40)
                      .-|||+|||-++
T Consensus        54 ~SsffvSliR~~   65 (208)
T COG1347          54 FSSFFVSLIRNY   65 (208)
T ss_pred             HHHHHHHHHHHH
T ss_conf             789999999985


Done!