BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 537021.9.peg.1083_1
         (40 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>537021.9.peg.1083_1 
          Length = 40

 Score = 81.3 bits (199), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/40 (100%), Positives = 40/40 (100%)

Query: 1  MKLYNFFVSLIVRQRVSQKNQIDVFKNPCDVSKKLTEVFL 40
          MKLYNFFVSLIVRQRVSQKNQIDVFKNPCDVSKKLTEVFL
Sbjct: 1  MKLYNFFVSLIVRQRVSQKNQIDVFKNPCDVSKKLTEVFL 40


>gi|254781087|ref|YP_003065500.1| H+transporting two-sector ATPase C subunit [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 91

 Score = 24.6 bits (52), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 23 DVFKNPCDVSKKLTEVFL 40
            F+NPC  S   TEV +
Sbjct: 51 GAFRNPCAASAHKTEVLI 68


>gi|254780760|ref|YP_003065173.1| hypothetical protein CLIBASIA_03235 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 330

 Score = 21.6 bits (44), Expect = 2.7,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query: 25  FKNPCDVSKKLTEVF 39
           F+ PC  +KKL E +
Sbjct: 117 FRVPCGFTKKLIETY 131


>gi|255764507|ref|YP_003065323.2| guanylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 222

 Score = 19.6 bits (39), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 5  NFFVSLIVRQRVSQKNQID 23
          NF +S+ V  RV + N++D
Sbjct: 41 NFEMSISVTTRVRRPNEVD 59


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.140    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,905
Number of Sequences: 1233
Number of extensions: 490
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 40
length of database: 328,796
effective HSP length: 14
effective length of query: 26
effective length of database: 311,534
effective search space:  8099884
effective search space used:  8099884
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.3 bits)
S2: 31 (16.5 bits)