Query         537021.9.peg.1086_1
Match_columns 38
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 23785
Date          Wed May 25 08:44:52 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i peg_1086.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1xg8_A Hypothetical protein SA  13.1      24   0.001   17.3  -0.8   23    3-25     13-35  (111)
  2 1hi7_A PS2 protein; growth fac   6.9 1.2E+02  0.0052   13.6   1.0   20    8-27      3-22  (60)
  3 1fsu_A N-acetylgalactosamine-4   6.2      62  0.0026   15.2  -0.9   12    2-13     40-51  (492)
  4 1vmj_A Hypothetical protein TM   4.9 1.4E+02  0.0058   13.4   0.2   28    4-31    106-135 (151)
  5 1e9t_A HITF, intestinal trefoi   4.9 1.6E+02  0.0066   13.1   0.5   22    6-27      5-26  (59)
  6 2b9k_A AMP, antimicrobial pept   4.9 1.5E+02  0.0062   13.2   0.4   12   22-33     35-46  (47)
  7 1vib_A Neurotoxin B-IV; hydrox   4.8 1.2E+02  0.0049   13.8  -0.2    8   21-28      2-9   (55)
  8 1i9w_A Fusion protein E1; enve   4.6 1.9E+02  0.0082   12.6   0.8    7   24-31     89-95  (390)
  9 1ve0_A Hypothetical protein (S   4.1 1.7E+02  0.0072   12.9   0.2   27    4-30     89-117 (134)
 10 2jn4_A Hypothetical protein FI   4.0 2.4E+02    0.01   12.1   0.9   16   17-32     48-63  (87)

No 1  
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=13.07  E-value=24  Score=17.29  Aligned_cols=23  Identities=35%  Similarity=0.631  Sum_probs=18.8

Q ss_pred             CCCCEEEEEECCCCCCCCCCCCC
Q ss_conf             22211331000065321222335
Q 537021.9.peg.1    3 YKNAMVSASCSIAPESRRSESWG   25 (38)
Q Consensus         3 yknamvsascsiapesrrseswg   25 (38)
                      |-...+-|||--+|.|.....|-
T Consensus        13 YGAe~~CASCV~~PSSkeTyEWL   35 (111)
T 1xg8_A           13 YGADVICASCVNAPTSKDIYDWL   35 (111)
T ss_dssp             EECSSCCGGGSSSCCHHHHHHHH
T ss_pred             ECCCCCCHHHCCCCCCHHHHHHH
T ss_conf             74455043313898714289999


No 2  
>1hi7_A PS2 protein; growth factor, cell motility, tumor suppressor, trefoil domain, signal; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1ps2_A
Probab=6.95  E-value=1.2e+02  Score=13.64  Aligned_cols=20  Identities=25%  Similarity=0.740  Sum_probs=13.9

Q ss_pred             EEEEECCCCCCCCCCCCCCE
Q ss_conf             33100006532122233516
Q 537021.9.peg.1    8 VSASCSIAPESRRSESWGGI   27 (38)
Q Consensus         8 vsascsiapesrrseswggi   27 (38)
                      -+.+|++.+..|..=.|-||
T Consensus         3 ~s~~C~v~~~~R~dCg~~gi   22 (60)
T 1hi7_A            3 QTETCTVAPRERQNCGFPGV   22 (60)
T ss_dssp             CEEECCCCTTTSCEEECTTC
T ss_pred             CCCCCCCCCCCCCCCCCCCC
T ss_conf             56614588453515798897


No 3  
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation, hydrolase, signal, glycoprotein, lysosome; HET: ALS NAG; 2.50A {Homo sapiens} SCOP: c.76.1.2
Probab=6.16  E-value=62  Score=15.16  Aligned_cols=12  Identities=8%  Similarity=-0.009  Sum_probs=7.6

Q ss_pred             CCCCCEEEEEEC
Q ss_conf             422211331000
Q 537021.9.peg.1    2 RYKNAMVSASCS   13 (38)
Q Consensus         2 ryknamvsascs   13 (38)
                      ++.|+.+++.|+
T Consensus        40 ~F~n~~s~~~c~   51 (492)
T 1fsu_A           40 LLDNYYTQPLXT   51 (492)
T ss_dssp             EETTEECCCC-C
T ss_pred             EECCEEECCCCC
T ss_conf             415620586566


No 4  
>1vmj_A Hypothetical protein TM0723; structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.52A {Thermotoga maritima MSB8} SCOP: d.273.1.1
Probab=4.94  E-value=1.4e+02  Score=13.42  Aligned_cols=28  Identities=18%  Similarity=0.348  Sum_probs=17.6

Q ss_pred             CCCEEEEEECCCCCCCC--CCCCCCEEEEE
Q ss_conf             22113310000653212--22335165664
Q 537021.9.peg.1    4 KNAMVSASCSIAPESRR--SESWGGIYTCF   31 (38)
Q Consensus         4 knamvsascsiapesrr--seswggiytcf   31 (38)
                      |.+++..|++|.-+..+  --.|.|||-|=
T Consensus       106 ks~l~G~s~tiPv~~G~L~LGtWQ~I~l~E  135 (151)
T 1vmj_A          106 KRTIMGREVVIAITDRKMDLGPWEQVFYGE  135 (151)
T ss_dssp             HHHHHCSEEEEEEETTEECCCTTCEEEEEE
T ss_pred             HHHHCCCEEEEEEECCEECCCCCCEEEEEE
T ss_conf             765329739999979998853777799998


No 5  
>1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1
Probab=4.91  E-value=1.6e+02  Score=13.12  Aligned_cols=22  Identities=9%  Similarity=0.397  Sum_probs=15.9

Q ss_pred             CEEEEEECCCCCCCCCCCCCCE
Q ss_conf             1133100006532122233516
Q 537021.9.peg.1    6 AMVSASCSIAPESRRSESWGGI   27 (38)
Q Consensus         6 amvsascsiapesrrseswggi   27 (38)
                      +.....|++.+..|..=.|-||
T Consensus         5 g~~~~~C~v~~~~R~dCg~~gi   26 (59)
T 1e9t_A            5 GLSANQCAVPAKDRVDCGYPHV   26 (59)
T ss_dssp             CCSSGGGCCCSTTCCCCCCSSC
T ss_pred             CCCCCCCCCCHHHCCCCCCCCC
T ss_conf             7687655688411624698898


No 6  
>2b9k_A AMP, antimicrobial peptide LCI; beta-stranded protein, antibiotic; NMR {Bacillus subtilis}
Probab=4.89  E-value=1.5e+02  Score=13.24  Aligned_cols=12  Identities=42%  Similarity=1.027  Sum_probs=9.2

Q ss_pred             CCCCCEEEEEEC
Q ss_conf             233516566402
Q 537021.9.peg.1   22 ESWGGIYTCFNR   33 (38)
Q Consensus        22 eswggiytcfnr   33 (38)
                      .-|-|||..+.|
T Consensus        35 gywvgiyevwdr   46 (47)
T 2b9k_A           35 GYWVGIYEVWDR   46 (47)
T ss_dssp             TEEEEEEESCCC
T ss_pred             CEEEEEEEEEEC
T ss_conf             469999996415


No 7  
>1vib_A Neurotoxin B-IV; hydroxylation; HET: HYP; NMR {Cerebratulus lacteus} SCOP: g.2.2.1
Probab=4.78  E-value=1.2e+02  Score=13.78  Aligned_cols=8  Identities=50%  Similarity=1.331  Sum_probs=0.0

Q ss_pred             CCCCCCEE
Q ss_conf             22335165
Q 537021.9.peg.1   21 SESWGGIY   28 (38)
Q Consensus        21 seswggiy   28 (38)
                      |..|||-|
T Consensus         2 s~twg~~y    9 (55)
T 1vib_A            2 SATWGAAY    9 (55)
T ss_dssp             CCCCSTTT
T ss_pred             CCCCCCCC
T ss_conf             66334647


No 8  
>1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A
Probab=4.57  E-value=1.9e+02  Score=12.64  Aligned_cols=7  Identities=86%  Similarity=2.513  Sum_probs=0.0

Q ss_pred             CCCEEEEE
Q ss_conf             35165664
Q 537021.9.peg.1   24 WGGIYTCF   31 (38)
Q Consensus        24 wggiytcf   31 (38)
                      |||-| ||
T Consensus        89 WGGAy-CF   95 (390)
T 1i9w_A           89 WGGAY-CF   95 (390)
T ss_pred             CCCEE-EE
T ss_conf             26546-76


No 9  
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding protein; 2.00A {Sulfolobus tokodaii}
Probab=4.11  E-value=1.7e+02  Score=12.91  Aligned_cols=27  Identities=15%  Similarity=0.257  Sum_probs=0.0

Q ss_pred             CCCEEEEEECCCCCCCCCC--CCCCEEEE
Q ss_conf             2211331000065321222--33516566
Q 537021.9.peg.1    4 KNAMVSASCSIAPESRRSE--SWGGIYTC   30 (38)
Q Consensus         4 knamvsascsiapesrrse--swggiytc   30 (38)
                      |.+++..|++|.-..-+-.  .|.|||-|
T Consensus        89 ks~l~g~s~tipv~~G~L~LGtWQ~I~l~  117 (134)
T 1ve0_A           89 ISAIIGNSRVVPIIEGKLDLGTWQRIILL  117 (134)
T ss_dssp             HHHHHCSEEEEEEETTEECCCTTCEEEEE
T ss_pred             HHHHCCCEEEEEEECCEECCCCCCEEEEE
T ss_conf             77524980999997999885476679999


No 10 
>2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1
Probab=3.96  E-value=2.4e+02  Score=12.13  Aligned_cols=16  Identities=38%  Similarity=0.582  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCEEEEEE
Q ss_conf             3212223351656640
Q 537021.9.peg.1   17 ESRRSESWGGIYTCFN   32 (38)
Q Consensus        17 esrrseswggiytcfn   32 (38)
                      +....+.|||..|--|
T Consensus        48 ~~e~~~~WGG~vtLaN   63 (87)
T 2jn4_A           48 EMENPALWGGKVTLAN   63 (87)
T ss_dssp             EESSSSSCSSEEEETT
T ss_pred             EEECCCCCCCEEEECC
T ss_conf             5125765588899789


Done!