Query 537021.9.peg.1086_1 Match_columns 38 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 08:44:52 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1086.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1xg8_A Hypothetical protein SA 13.1 24 0.001 17.3 -0.8 23 3-25 13-35 (111) 2 1hi7_A PS2 protein; growth fac 6.9 1.2E+02 0.0052 13.6 1.0 20 8-27 3-22 (60) 3 1fsu_A N-acetylgalactosamine-4 6.2 62 0.0026 15.2 -0.9 12 2-13 40-51 (492) 4 1vmj_A Hypothetical protein TM 4.9 1.4E+02 0.0058 13.4 0.2 28 4-31 106-135 (151) 5 1e9t_A HITF, intestinal trefoi 4.9 1.6E+02 0.0066 13.1 0.5 22 6-27 5-26 (59) 6 2b9k_A AMP, antimicrobial pept 4.9 1.5E+02 0.0062 13.2 0.4 12 22-33 35-46 (47) 7 1vib_A Neurotoxin B-IV; hydrox 4.8 1.2E+02 0.0049 13.8 -0.2 8 21-28 2-9 (55) 8 1i9w_A Fusion protein E1; enve 4.6 1.9E+02 0.0082 12.6 0.8 7 24-31 89-95 (390) 9 1ve0_A Hypothetical protein (S 4.1 1.7E+02 0.0072 12.9 0.2 27 4-30 89-117 (134) 10 2jn4_A Hypothetical protein FI 4.0 2.4E+02 0.01 12.1 0.9 16 17-32 48-63 (87) No 1 >1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17 Probab=13.07 E-value=24 Score=17.29 Aligned_cols=23 Identities=35% Similarity=0.631 Sum_probs=18.8 Q ss_pred CCCCEEEEEECCCCCCCCCCCCC Q ss_conf 22211331000065321222335 Q 537021.9.peg.1 3 YKNAMVSASCSIAPESRRSESWG 25 (38) Q Consensus 3 yknamvsascsiapesrrseswg 25 (38) |-...+-|||--+|.|.....|- T Consensus 13 YGAe~~CASCV~~PSSkeTyEWL 35 (111) T 1xg8_A 13 YGADVICASCVNAPTSKDIYDWL 35 (111) T ss_dssp EECSSCCGGGSSSCCHHHHHHHH T ss_pred ECCCCCCHHHCCCCCCHHHHHHH T ss_conf 74455043313898714289999 No 2 >1hi7_A PS2 protein; growth factor, cell motility, tumor suppressor, trefoil domain, signal; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1ps2_A Probab=6.95 E-value=1.2e+02 Score=13.64 Aligned_cols=20 Identities=25% Similarity=0.740 Sum_probs=13.9 Q ss_pred EEEEECCCCCCCCCCCCCCE Q ss_conf 33100006532122233516 Q 537021.9.peg.1 8 VSASCSIAPESRRSESWGGI 27 (38) Q Consensus 8 vsascsiapesrrseswggi 27 (38) -+.+|++.+..|..=.|-|| T Consensus 3 ~s~~C~v~~~~R~dCg~~gi 22 (60) T 1hi7_A 3 QTETCTVAPRERQNCGFPGV 22 (60) T ss_dssp CEEECCCCTTTSCEEECTTC T ss_pred CCCCCCCCCCCCCCCCCCCC T ss_conf 56614588453515798897 No 3 >1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation, hydrolase, signal, glycoprotein, lysosome; HET: ALS NAG; 2.50A {Homo sapiens} SCOP: c.76.1.2 Probab=6.16 E-value=62 Score=15.16 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=7.6 Q ss_pred CCCCCEEEEEEC Q ss_conf 422211331000 Q 537021.9.peg.1 2 RYKNAMVSASCS 13 (38) Q Consensus 2 ryknamvsascs 13 (38) ++.|+.+++.|+ T Consensus 40 ~F~n~~s~~~c~ 51 (492) T 1fsu_A 40 LLDNYYTQPLXT 51 (492) T ss_dssp EETTEECCCC-C T ss_pred EECCEEECCCCC T ss_conf 415620586566 No 4 >1vmj_A Hypothetical protein TM0723; structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 1.52A {Thermotoga maritima MSB8} SCOP: d.273.1.1 Probab=4.94 E-value=1.4e+02 Score=13.42 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=17.6 Q ss_pred CCCEEEEEECCCCCCCC--CCCCCCEEEEE Q ss_conf 22113310000653212--22335165664 Q 537021.9.peg.1 4 KNAMVSASCSIAPESRR--SESWGGIYTCF 31 (38) Q Consensus 4 knamvsascsiapesrr--seswggiytcf 31 (38) |.+++..|++|.-+..+ --.|.|||-|= T Consensus 106 ks~l~G~s~tiPv~~G~L~LGtWQ~I~l~E 135 (151) T 1vmj_A 106 KRTIMGREVVIAITDRKMDLGPWEQVFYGE 135 (151) T ss_dssp HHHHHCSEEEEEEETTEECCCTTCEEEEEE T ss_pred HHHHCCCEEEEEEECCEECCCCCCEEEEEE T ss_conf 765329739999979998853777799998 No 5 >1e9t_A HITF, intestinal trefoil factor; solution structure, trefoil domain, spectroscopy, cell motility factor; NMR {Homo sapiens} SCOP: g.16.1.1 PDB: 1pe3_1 Probab=4.91 E-value=1.6e+02 Score=13.12 Aligned_cols=22 Identities=9% Similarity=0.397 Sum_probs=15.9 Q ss_pred CEEEEEECCCCCCCCCCCCCCE Q ss_conf 1133100006532122233516 Q 537021.9.peg.1 6 AMVSASCSIAPESRRSESWGGI 27 (38) Q Consensus 6 amvsascsiapesrrseswggi 27 (38) +.....|++.+..|..=.|-|| T Consensus 5 g~~~~~C~v~~~~R~dCg~~gi 26 (59) T 1e9t_A 5 GLSANQCAVPAKDRVDCGYPHV 26 (59) T ss_dssp CCSSGGGCCCSTTCCCCCCSSC T ss_pred CCCCCCCCCCHHHCCCCCCCCC T ss_conf 7687655688411624698898 No 6 >2b9k_A AMP, antimicrobial peptide LCI; beta-stranded protein, antibiotic; NMR {Bacillus subtilis} Probab=4.89 E-value=1.5e+02 Score=13.24 Aligned_cols=12 Identities=42% Similarity=1.027 Sum_probs=9.2 Q ss_pred CCCCCEEEEEEC Q ss_conf 233516566402 Q 537021.9.peg.1 22 ESWGGIYTCFNR 33 (38) Q Consensus 22 eswggiytcfnr 33 (38) .-|-|||..+.| T Consensus 35 gywvgiyevwdr 46 (47) T 2b9k_A 35 GYWVGIYEVWDR 46 (47) T ss_dssp TEEEEEEESCCC T ss_pred CEEEEEEEEEEC T ss_conf 469999996415 No 7 >1vib_A Neurotoxin B-IV; hydroxylation; HET: HYP; NMR {Cerebratulus lacteus} SCOP: g.2.2.1 Probab=4.78 E-value=1.2e+02 Score=13.78 Aligned_cols=8 Identities=50% Similarity=1.331 Sum_probs=0.0 Q ss_pred CCCCCCEE Q ss_conf 22335165 Q 537021.9.peg.1 21 SESWGGIY 28 (38) Q Consensus 21 seswggiy 28 (38) |..|||-| T Consensus 2 s~twg~~y 9 (55) T 1vib_A 2 SATWGAAY 9 (55) T ss_dssp CCCCSTTT T ss_pred CCCCCCCC T ss_conf 66334647 No 8 >1i9w_A Fusion protein E1; envelope glycoprotein, membrane fusion, viral protein; 3.00A {Semliki forest virus} SCOP: b.1.18.4 f.10.1.1 PDB: 2ala_A 1rer_A Probab=4.57 E-value=1.9e+02 Score=12.64 Aligned_cols=7 Identities=86% Similarity=2.513 Sum_probs=0.0 Q ss_pred CCCEEEEE Q ss_conf 35165664 Q 537021.9.peg.1 24 WGGIYTCF 31 (38) Q Consensus 24 wggiytcf 31 (38) |||-| || T Consensus 89 WGGAy-CF 95 (390) T 1i9w_A 89 WGGAY-CF 95 (390) T ss_pred CCCEE-EE T ss_conf 26546-76 No 9 >1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding protein; 2.00A {Sulfolobus tokodaii} Probab=4.11 E-value=1.7e+02 Score=12.91 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=0.0 Q ss_pred CCCEEEEEECCCCCCCCCC--CCCCEEEE Q ss_conf 2211331000065321222--33516566 Q 537021.9.peg.1 4 KNAMVSASCSIAPESRRSE--SWGGIYTC 30 (38) Q Consensus 4 knamvsascsiapesrrse--swggiytc 30 (38) |.+++..|++|.-..-+-. .|.|||-| T Consensus 89 ks~l~g~s~tipv~~G~L~LGtWQ~I~l~ 117 (134) T 1ve0_A 89 ISAIIGNSRVVPIIEGKLDLGTWQRIILL 117 (134) T ss_dssp HHHHHCSEEEEEEETTEECCCTTCEEEEE T ss_pred HHHHCCCEEEEEEECCEECCCCCCEEEEE T ss_conf 77524980999997999885476679999 No 10 >2jn4_A Hypothetical protein FIXU, NIFT; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Rhodopseudomonas palustris} SCOP: b.173.1.1 Probab=3.96 E-value=2.4e+02 Score=12.13 Aligned_cols=16 Identities=38% Similarity=0.582 Sum_probs=0.0 Q ss_pred CCCCCCCCCCEEEEEE Q ss_conf 3212223351656640 Q 537021.9.peg.1 17 ESRRSESWGGIYTCFN 32 (38) Q Consensus 17 esrrseswggiytcfn 32 (38) +....+.|||..|--| T Consensus 48 ~~e~~~~WGG~vtLaN 63 (87) T 2jn4_A 48 EMENPALWGGKVTLAN 63 (87) T ss_dssp EESSSSSCSSEEEETT T ss_pred EEECCCCCCCEEEECC T ss_conf 5125765588899789 Done!