RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= 537021.9.peg.1086_1
         (38 letters)



>gnl|CDD|34516 COG4907, COG4907, Predicted membrane protein [Function unknown].
          Length = 595

 Score = 25.4 bits (55), Expect = 3.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 2   RYKNAMVSASCSIAPESRRSESWGGI 27
           R  N +  A  +IA   R S S GG 
Sbjct: 555 RSFNNLNRAYSAIASSRRSSSSGGGG 580


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.322    0.129    0.405 

Gapped
Lambda     K      H
   0.267   0.0553    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 412,309
Number of extensions: 9038
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 38
Length of database: 6,263,737
Length adjustment: 12
Effective length of query: 26
Effective length of database: 6,004,429
Effective search space: 156115154
Effective search space used: 156115154
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)