RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= 537021.9.peg.1086_1 (38 letters) >d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]} Length = 111 Score = 22.8 bits (49), Expect = 8.0 Identities = 8/22 (36%), Positives = 11/22 (50%) Query: 3 YKNAMVSASCSIAPESRRSESW 24 Y ++ ASC AP S+ W Sbjct: 13 YGADVICASCVNAPTSKDIYDW 34 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.322 0.129 0.405 Gapped Lambda K H 0.267 0.0643 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 128,185 Number of extensions: 2526 Number of successful extensions: 7 Number of sequences better than 10.0: 1 Number of HSP's gapped: 7 Number of HSP's successfully gapped: 1 Length of query: 38 Length of database: 2,407,596 Length adjustment: 11 Effective length of query: 27 Effective length of database: 2,256,566 Effective search space: 60927282 Effective search space used: 60927282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 47 (22.1 bits)