RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 537021.9.peg.1086_1
         (38 letters)



>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798
          {Staphylococcus aureus [TaxId: 1280]}
          Length = 111

 Score = 22.8 bits (49), Expect = 8.0
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 3  YKNAMVSASCSIAPESRRSESW 24
          Y   ++ ASC  AP S+    W
Sbjct: 13 YGADVICASCVNAPTSKDIYDW 34


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.129    0.405 

Gapped
Lambda     K      H
   0.267   0.0643    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 128,185
Number of extensions: 2526
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 38
Length of database: 2,407,596
Length adjustment: 11
Effective length of query: 27
Effective length of database: 2,256,566
Effective search space: 60927282
Effective search space used: 60927282
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)