Query 537021.9.peg.1087_1 Match_columns 48 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 23785 Date Wed May 25 06:44:03 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i peg_1087.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3dac_P Cellular tumor antigen 25.0 7.6 0.00032 19.1 -1.1 16 28-43 5-20 (26) 2 2k8f_B Cellular tumor antigen 10.0 23 0.00098 16.8 -1.7 14 29-42 22-35 (39) 3 1zxh_A Immunoglobulin G bindin 6.2 56 0.0024 15.0 -1.1 14 12-25 18-31 (56) 4 2pka_A Kallikrein A; serine pr 5.2 2E+02 0.0084 12.4 1.3 17 21-37 26-42 (80) 5 3eps_A Isocitrate dehydrogenas 4.9 1.2E+02 0.0052 13.4 -0.0 29 14-46 398-426 (578) 6 2l14_B Cellular tumor antigen 4.5 55 0.0023 15.0 -2.1 14 29-42 10-23 (49) 7 2g7j_A Putative cytoplasmic pr 3.8 2.3E+02 0.0096 12.1 0.6 15 16-30 41-55 (124) 8 3bbo_1 Ribosomal protein L31; 3.5 1.6E+02 0.0067 12.9 -0.4 22 9-30 25-57 (144) 9 1xru_A 4-deoxy-L-threo-5-hexos 3.4 79 0.0033 14.3 -2.1 26 1-26 4-29 (282) 10 2ww6_A Fibritin, T4 fibritin; 3.3 2.5E+02 0.01 11.9 0.5 6 29-34 19-24 (27) No 1 >3dac_P Cellular tumor antigen P53; MDMX, MDM4, HDMX, HDM4, MDM-4, MDM-X, MDM2, HDM2, nucleus, oncogene, apoptosis, cell cycle, disease mutation; 1.80A {Danio rerio} Probab=24.99 E-value=7.6 Score=19.10 Aligned_cols=16 Identities=50% Similarity=0.891 Sum_probs=13.0 Q ss_pred CEEEEECCCCCEEEEE Q ss_conf 2389986755110033 Q 537021.9.peg.1 28 PKWILLSPNNVMAPLN 43 (48) Q Consensus 28 pkwillspnnvmapln 43 (48) .-|-||..|||..||- T Consensus 5 dlwkllpennvlsplp 20 (26) T 3dac_P 5 DLWKLLPENNVLSPLP 20 (26) T ss_pred HHHHHCCCCCCCCCCC T ss_conf 8998775457567786 No 2 >2k8f_B Cellular tumor antigen P53; complex of P53 and P300, acetylation, bromodomain, cell cycle, chromosomal rearrangement, citrullination; NMR {Homo sapiens} Probab=9.99 E-value=23 Score=16.82 Aligned_cols=14 Identities=57% Similarity=1.056 Sum_probs=11.3 Q ss_pred EEEEECCCCCEEEE Q ss_conf 38998675511003 Q 537021.9.peg.1 29 KWILLSPNNVMAPL 42 (48) Q Consensus 29 kwillspnnvmapl 42 (48) -|-||.+|||..++ T Consensus 22 LWkLLP~nnvLs~~ 35 (39) T 2k8f_B 22 LWKLLPENNVLSPL 35 (39) T ss_dssp HHHTCSSSCCCCCC T ss_pred HHHHCCCCCCCCCC T ss_conf 99867843345657 No 3 >1zxh_A Immunoglobulin G binding protein G; IGG-binding, phage display, immune system/protein binding complex; NMR {Streptococcus SP} Probab=6.22 E-value=56 Score=15.00 Aligned_cols=14 Identities=64% Similarity=0.805 Sum_probs=11.5 Q ss_pred EEECCCCCCCCEEE Q ss_conf 23135310021566 Q 537021.9.peg.1 12 VMASNAETARNAFL 25 (48) Q Consensus 12 vmasnaetarnafl 25 (48) -+|-.|+++|+.|. T Consensus 18 t~avdaataek~Fk 31 (56) T 1zxh_A 18 TKAVDAETARNAFI 31 (56) T ss_dssp EECSSHHHHHHHHH T ss_pred CCCHHHHHHHHHHH T ss_conf 12014789999999 No 4 >2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Probab=5.15 E-value=2e+02 Score=12.38 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=11.8 Q ss_pred CCEEEECCEEEEECCCC Q ss_conf 21566532389986755 Q 537021.9.peg.1 21 RNAFLIHPKWILLSPNN 37 (48) Q Consensus 21 rnaflihpkwillspnn 37 (48) -.+-||.+.|+|-.-.- T Consensus 26 CgGsLI~~~~VLTAAHC 42 (80) T 2pka_A 26 CGGVLVNPKWVLTAAHC 42 (80) T ss_dssp EEEEEEETTEEEECGGG T ss_pred EEEEEECCCCEEEEEEE T ss_conf 98999456008991675 No 5 >3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding, glyoxylate bypass, nucleotide-binding, protein phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157} PDB: 3lcb_A* 3lc6_A* Probab=4.88 E-value=1.2e+02 Score=13.37 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=17.4 Q ss_pred ECCCCCCCCEEEECCEEEEECCCCCEEEEEEEE Q ss_conf 135310021566532389986755110033566 Q 537021.9.peg.1 14 ASNAETARNAFLIHPKWILLSPNNVMAPLNLFL 46 (48) Q Consensus 14 asnaetarnaflihpkwillspnnvmaplnlfl 46 (48) +|.-+-..+..+|+--|| ..-|.|||||| T Consensus 398 ~~~v~~~~d~~ii~hly~----ERrm~PLnlyl 426 (578) T 3eps_A 398 AEKITDLGEQIVIRHLYI----ERRMVPLNIWL 426 (578) T ss_dssp GGGEEEETTEEEEEEEEE----EECCEEHHHHH T ss_pred CHHEEECCCEEEEEEEEE----EEEECCHHHHH T ss_conf 411798586799887777----63100366788 No 6 >2l14_B Cellular tumor antigen P53; CBP, TAD, protein binding; NMR {Homo sapiens} Probab=4.52 E-value=55 Score=15.05 Aligned_cols=14 Identities=57% Similarity=1.056 Sum_probs=9.1 Q ss_pred EEEEECCCCCEEEE Q ss_conf 38998675511003 Q 537021.9.peg.1 29 KWILLSPNNVMAPL 42 (48) Q Consensus 29 kwillspnnvmapl 42 (48) -|-||.+|||..++ T Consensus 10 LWkLLPenNvLS~~ 23 (49) T 2l14_B 10 LWKLLPENNVLSPL 23 (49) T ss_dssp HHHHSSTTCCCSSS T ss_pred HHHHCCCCCCCCCC T ss_conf 99867854445555 No 7 >2g7j_A Putative cytoplasmic protein; STR72, structure, autostructure, structural genomics, PSI, protein structure initiative; NMR {Salmonella typhimurium LT2} SCOP: d.198.5.1 Probab=3.80 E-value=2.3e+02 Score=12.11 Aligned_cols=15 Identities=40% Similarity=0.791 Sum_probs=11.3 Q ss_pred CCCCCCCEEEECCEE Q ss_conf 531002156653238 Q 537021.9.peg.1 16 NAETARNAFLIHPKW 30 (48) Q Consensus 16 naetarnaflihpkw 30 (48) .|.-.|.|.+|||.. T Consensus 41 EaRmGRTALvIHP~l 55 (124) T 2g7j_A 41 EARMGRTALIIHPRL 55 (124) T ss_dssp TCSSTTSCEECCSSC T ss_pred HHHCCCEEEEECHHH T ss_conf 561584368865147 No 8 >3bbo_1 Ribosomal protein L31; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Arabidopsis thaliana} Probab=3.53 E-value=1.6e+02 Score=12.86 Aligned_cols=22 Identities=14% Similarity=0.333 Sum_probs=0.0 Q ss_pred CCCEEECCCCCCCCEEE-----------ECCEE Q ss_conf 53023135310021566-----------53238 Q 537021.9.peg.1 9 PNRVMASNAETARNAFL-----------IHPKW 30 (48) Q Consensus 9 pnrvmasnaetarnafl-----------ihpkw 30 (48) +++++..--...|+... |||+| T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~KKdIHP~y 57 (144) T 3bbo_1 25 VMAAVKGGKQSVRRSSNTVVQITCRKKELHPEF 57 (144) T ss_dssp -------------------------CTTTCCCC T ss_pred CCHHHHHCCHHHHHCCCCCCEEECCCCCCCCCC T ss_conf 111344400334320121001101358889898 No 9 >1xru_A 4-deoxy-L-threo-5-hexosulose-uronate ketol- isomerase; beta barrel, cupin; HET: 1PE; 1.94A {Escherichia coli} SCOP: b.82.1.13 PDB: 1x8m_A Probab=3.37 E-value=79 Score=14.31 Aligned_cols=26 Identities=23% Similarity=0.468 Sum_probs=0.0 Q ss_pred CCEEEEECCCCEEECCCCCCCCEEEE Q ss_conf 96068873530231353100215665 Q 537021.9.peg.1 1 MKTKVMVHPNRVMASNAETARNAFLI 26 (48) Q Consensus 1 mktkvmvhpnrvmasnaetarnafli 26 (48) |.+.--+||..+..-+.+.-|..||| T Consensus 4 m~~r~a~~p~~~~~~~t~~lr~~fli 29 (282) T 1xru_A 4 MDVRQSIHSAHAKTLDTQGLRNEFLV 29 (282) T ss_dssp CEEECCCCHHHHTTCCHHHHHHHHEE T ss_pred CEEECCCCHHHHHHCCHHHHHHHHCH T ss_conf 24661699799712899999975046 No 10 >2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A* Probab=3.32 E-value=2.5e+02 Score=11.93 Aligned_cols=6 Identities=67% Similarity=1.592 Sum_probs=0.0 Q ss_pred EEEEEC Q ss_conf 389986 Q 537021.9.peg.1 29 KWILLS 34 (48) Q Consensus 29 kwills 34 (48) .|+||| T Consensus 19 ewvlls 24 (27) T 2ww6_A 19 EWVLLS 24 (27) T ss_dssp EEEEGG T ss_pred CEEEEE T ss_conf 289986 Done!