BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= 537021.9.peg.1087_1
(48 letters)
Database: nr
13,984,884 sequences; 4,792,584,752 total letters
Searching..................................................done
Results from round 1
>gi|315122533|ref|YP_004063022.1| hypothetical protein CKC_03925 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495935|gb|ADR52534.1| hypothetical protein CKC_03925 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 331
Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 4 KVMVHPNRVMASNAETARNAFLIHP 28
KVMVHPNRVMASNAETARNAFLI P
Sbjct: 252 KVMVHPNRVMASNAETARNAFLIDP 276
>gi|227822441|ref|YP_002826413.1| putative phage major head protein [Sinorhizobium fredii NGR234]
gi|227341442|gb|ACP25660.1| putative phage major head protein [Sinorhizobium fredii NGR234]
Length = 331
Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 5 VMVHPNRVMASNAETARNAFLI 26
VM+HPNRV A N ARNAF I
Sbjct: 253 VMIHPNRVQAVNGGVARNAFFI 274
>gi|227821704|ref|YP_002825674.1| putative phage related protein [Sinorhizobium fredii NGR234]
gi|227340703|gb|ACP24921.1| putative phage related protein [Sinorhizobium fredii NGR234]
Length = 123
Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 5 VMVHPNRVMASNAETARNAFLIH 27
VM+HPNRV A+ A ARNAF I
Sbjct: 65 VMIHPNRVQATGATQARNAFFID 87
Searching..................................................done
Results from round 2
CONVERGED!
>gi|315122533|ref|YP_004063022.1| hypothetical protein CKC_03925 [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495935|gb|ADR52534.1| hypothetical protein CKC_03925 [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 331
Score = 55.8 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/25 (96%), Positives = 24/25 (96%)
Query: 4 KVMVHPNRVMASNAETARNAFLIHP 28
KVMVHPNRVMASNAETARNAFLI P
Sbjct: 252 KVMVHPNRVMASNAETARNAFLIDP 276
>gi|227821704|ref|YP_002825674.1| putative phage related protein [Sinorhizobium fredii NGR234]
gi|227340703|gb|ACP24921.1| putative phage related protein [Sinorhizobium fredii NGR234]
Length = 123
Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 5 VMVHPNRVMASNAETARNAFLIH 27
VM+HPNRV A+ A ARNAF I
Sbjct: 65 VMIHPNRVQATGATQARNAFFID 87
>gi|227822441|ref|YP_002826413.1| putative phage major head protein [Sinorhizobium fredii NGR234]
gi|227341442|gb|ACP25660.1| putative phage major head protein [Sinorhizobium fredii NGR234]
Length = 331
Score = 38.1 bits (87), Expect = 0.44, Method: Composition-based stats.
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 5 VMVHPNRVMASNAETARNAFLIH 27
VM+HPNRV A N ARNAF I
Sbjct: 253 VMIHPNRVQAVNGGVARNAFFID 275
>gi|327489361|gb|EGF21154.1| cell wall surface anchor family protein [Streptococcus sanguinis
SK1058]
Length = 2843
Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 10 NRVMASNAETARNAFLIHPKWILLSPNNVMAPLN 43
NRV+ N E A N+ + P WI S +N+ P N
Sbjct: 287 NRVIVRNIEGADNSTYLDPNWIRYSTDNLSVPGN 320
>gi|327461506|gb|EGF07837.1| cell wall surface anchor family protein [Streptococcus sanguinis
SK1]
Length = 2807
Score = 33.9 bits (76), Expect = 7.0, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 10 NRVMASNAETARNAFLIHPKWILLSPNNVMAPLN 43
NRV+ N E A N+ + P WI S +N+ P N
Sbjct: 287 NRVIVRNIEGADNSTYLDPNWIRYSTDNLSVPGN 320
Database: nr
Posted date: May 13, 2011 4:10 AM
Number of letters in database: 999,999,932
Number of sequences in database: 2,987,209
Database: /data/usr2/db/fasta/nr.01
Posted date: May 13, 2011 4:17 AM
Number of letters in database: 999,998,956
Number of sequences in database: 2,896,973
Database: /data/usr2/db/fasta/nr.02
Posted date: May 13, 2011 4:23 AM
Number of letters in database: 999,999,979
Number of sequences in database: 2,907,862
Database: /data/usr2/db/fasta/nr.03
Posted date: May 13, 2011 4:29 AM
Number of letters in database: 999,999,513
Number of sequences in database: 2,932,190
Database: /data/usr2/db/fasta/nr.04
Posted date: May 13, 2011 4:33 AM
Number of letters in database: 792,586,372
Number of sequences in database: 2,260,650
Lambda K H
0.322 0.137 0.431
Lambda K H
0.267 0.0442 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 907,998,397
Number of Sequences: 13984884
Number of extensions: 22881800
Number of successful extensions: 56670
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 56660
Number of HSP's gapped (non-prelim): 10
length of query: 48
length of database: 4,792,584,752
effective HSP length: 21
effective length of query: 27
effective length of database: 4,498,902,188
effective search space: 121470359076
effective search space used: 121470359076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.4 bits)
S2: 76 (33.8 bits)