BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 537021.9.peg.1087_1
         (48 letters)

Database: nr 
           13,984,884 sequences; 4,792,584,752 total letters

Searching..................................................done



>gi|315122533|ref|YP_004063022.1| hypothetical protein CKC_03925 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495935|gb|ADR52534.1| hypothetical protein CKC_03925 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 331

 Score = 53.1 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/25 (96%), Positives = 24/25 (96%)

Query: 4   KVMVHPNRVMASNAETARNAFLIHP 28
           KVMVHPNRVMASNAETARNAFLI P
Sbjct: 252 KVMVHPNRVMASNAETARNAFLIDP 276


>gi|227821704|ref|YP_002825674.1| putative phage related protein [Sinorhizobium fredii NGR234]
 gi|227340703|gb|ACP24921.1| putative phage related protein [Sinorhizobium fredii NGR234]
          Length = 123

 Score = 36.6 bits (83), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 17/22 (77%)

Query: 5  VMVHPNRVMASNAETARNAFLI 26
          VM+HPNRV A+ A  ARNAF I
Sbjct: 65 VMIHPNRVQATGATQARNAFFI 86


>gi|227822441|ref|YP_002826413.1| putative phage major head protein [Sinorhizobium fredii NGR234]
 gi|227341442|gb|ACP25660.1| putative phage major head protein [Sinorhizobium fredii NGR234]
          Length = 331

 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/22 (68%), Positives = 16/22 (72%)

Query: 5   VMVHPNRVMASNAETARNAFLI 26
           VM+HPNRV A N   ARNAF I
Sbjct: 253 VMIHPNRVQAVNGGVARNAFFI 274


  Database: nr
    Posted date:  May 13, 2011  4:10 AM
  Number of letters in database: 999,999,932
  Number of sequences in database:  2,987,209
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 13, 2011  4:17 AM
  Number of letters in database: 999,998,956
  Number of sequences in database:  2,896,973
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 13, 2011  4:23 AM
  Number of letters in database: 999,999,979
  Number of sequences in database:  2,907,862
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 13, 2011  4:29 AM
  Number of letters in database: 999,999,513
  Number of sequences in database:  2,932,190
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 13, 2011  4:33 AM
  Number of letters in database: 792,586,372
  Number of sequences in database:  2,260,650
  
Lambda     K      H
   0.327    0.134    0.414 

Lambda     K      H
   0.267   0.0436    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,116,086
Number of Sequences: 13984884
Number of extensions: 15892320
Number of successful extensions: 38496
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38492
Number of HSP's gapped (non-prelim): 4
length of query: 48
length of database: 4,792,584,752
effective HSP length: 21
effective length of query: 27
effective length of database: 4,498,902,188
effective search space: 121470359076
effective search space used: 121470359076
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 76 (33.8 bits)